Aliases for LINC02624 Gene

Data sources for LINC02624 Gene:

RNA type for LINC02624 Gene

lncRNA

Aliases for LINC02624 Gene

External Ids for LINC02624 Gene

Summaries for LINC02624 Gene

GeneCards Summary for LINC02624 Gene

LINC02624 (Long Intergenic Non-Protein Coding RNA 2624) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02624 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02624 Gene

Genomics for LINC02624 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02624 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J106146 Enhancer 0.5 Ensembl CraniofacialAtlas 0.4 +7.9 7863 1.6 GATA2 CHD2 HSALNG0080464 LINC02624 lnc-SORCS3-15 lnc-SORCS1-6 lnc-SORCS1-7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02624 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02624 Gene

Latest Assembly
chr10:106,139,359-106,199,380
(GRCh38/hg38)
Size:
60,022 bases
Orientation:
Plus strand

Previous Assembly
chr10:107,899,923-107,948,480
(GRCh37/hg19 by Entrez Gene)
Size:
48,558 bases
Orientation:
Plus strand

chr10:107,900,022-107,948,480
(GRCh37/hg19 by Ensembl)
Size:
48,459 bases
Orientation:
Plus strand

Genomic View for LINC02624 Gene

Genes around LINC02624 on UCSC Golden Path with GeneCards custom track
LINC02624 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02624 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02624 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02624 Gene

Proteins for LINC02624 Gene

Post-translational modifications for LINC02624 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02624 Gene

Domains & Families for LINC02624 Gene

Gene Families for LINC02624 Gene

genes like me logo Genes that share domains with LINC02624: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02624 Gene

Function for LINC02624 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02624 Gene

Localization for LINC02624 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02624 Gene

Pathways & Interactions for LINC02624 Gene

PathCards logo

SuperPathways for LINC02624 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02624 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02624 Gene

Drugs & Compounds for LINC02624 Gene

No Compound Related Data Available

Transcripts for LINC02624 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02624 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00000570B0_9606 lncRNA 669 4

Ensembl: ENST00000452286 (view in UCSC) ,

LncBook: HSALNT0167787,

LNCipedia: lnc-SORCS3-5:4,

NONCODE: NONHSAT016273.2,

URS0000306674_9606 lncRNA 477 4

Ensembl: ENST00000426752 (view in UCSC) ,

LncBook: HSALNT0167790,

LNCipedia: lnc-SORCS3-5:7,

NONCODE: NONHSAT016275.2,

URS00000BC74B_9606 lncRNA 468 4

Ensembl: ENST00000449761 (view in UCSC) ,

LncBook: HSALNT0167781,

LNCipedia: lnc-SORCS3-5:2,

NONCODE: NONHSAT016269.2,

URS0000428147_9606 lncRNA 553 3

Ensembl: ENST00000424701 (view in UCSC) ,

LNCipedia: lnc-SORCS3-5:3,

NONCODE: NONHSAT016270.2,

URS0000A76AE3_9606 lncRNA 677 2

RefSeq: NR_134331,

LNCipedia: lnc-SORCS3-5:8,

LINC02624 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02624 Gene

6 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02624 Gene

No ASD Table

Relevant External Links for LINC02624 Gene

GeneLoc Exon Structure for
LINC02624

Expression for LINC02624 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02624

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02624 Gene

Orthologs for LINC02624 Gene

Evolution for LINC02624 Gene

ENSEMBL:
Gene Tree for LINC02624 (if available)
TreeFam:
Gene Tree for LINC02624 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02624

No data available for Orthologs for LINC02624 Gene

Paralogs for LINC02624 Gene

No data available for Paralogs for LINC02624 Gene

Variants for LINC02624 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02624 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02624 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02624
Leiden Open Variation Database (LOVD)
LINC02624

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02624 Gene

Disorders for LINC02624 Gene

Additional Disease Information for LINC02624

Open Targets Platform
Open Targets Platform

No disorders were found for LINC02624 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02624 Gene

Publications for LINC02624 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC02624 Gene

Products for LINC02624 Gene

Sources for LINC02624 Gene