Aliases for LINC02622 Gene

Data sources for LINC02622 Gene:

RNA type for LINC02622 Gene

lncRNA

Aliases for LINC02622 Gene

External Ids for LINC02622 Gene

Previous GeneCards Identifiers for LINC02622 Gene

  • GC10P070944
  • GC10P070945
  • GC10P070946
  • GC10P070947
  • GC10P070948
  • GC10P070949

Summaries for LINC02622 Gene

GeneCards Summary for LINC02622 Gene

LINC02622 (Long Intergenic Non-Protein Coding RNA 2622) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02622 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02622 Gene

Genomics for LINC02622 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02622 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J070939 Enhancer 0.7 Ensembl ENCODE 250.7 +1.7 1665 3 ZIC2 NFIC MYNN NRF1 NFIB PRDM4 EGR2 ZFHX2 LINC02622 UNC5B-AS1 PCBD1 UNC5B ENSG00000285300 HSALNG0078685
GH10J070950 Enhancer 0.4 ENCODE 0.4 +12.6 12613 2.6 REST EHMT2 MIER1 LINC02622 HSALNG0078685 ENSG00000285300 lnc-PCBD1-2 PCBD1 UNC5B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02622 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02622 Gene

Latest Assembly
chr10:70,939,036-70,955,947
(GRCh38/hg38)
Size:
16,912 bases
Orientation:
Plus strand

Previous Assembly
chr10:72,698,810-72,715,398
(GRCh37/hg19 by Entrez Gene)
Size:
16,589 bases
Orientation:
Plus strand

chr10:72,698,810-72,715,398
(GRCh37/hg19 by Ensembl)
Size:
16,589 bases
Orientation:
Plus strand

Genomic View for LINC02622 Gene

Genes around LINC02622 on UCSC Golden Path with GeneCards custom track
LINC02622 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02622 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02622 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02622 Gene

Proteins for LINC02622 Gene

Post-translational modifications for LINC02622 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02622 Gene

Domains & Families for LINC02622 Gene

Gene Families for LINC02622 Gene

genes like me logo Genes that share domains with LINC02622: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02622 Gene

Function for LINC02622 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02622 Gene

Localization for LINC02622 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02622 Gene

Pathways & Interactions for LINC02622 Gene

PathCards logo

SuperPathways for LINC02622 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02622 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02622 Gene

Drugs & Compounds for LINC02622 Gene

No Compound Related Data Available

Transcripts for LINC02622 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02622 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS000012C861_9606 lncRNA 537 4

RefSeq: NR_134313,

LncBook: HSALNT0164085,

LNCipedia: lnc-SGPL1-2:1,

NONCODE: NONHSAT013867.2,

URS0000774D99_9606 lncRNA 411 2

Ensembl: ENST00000558852 (view in UCSC) ,

LNCipedia: lnc-SGPL1-2:4,

URS0000EF45BC_9606 lncRNA 1863 1

Ensembl: ENST00000664582 (view in UCSC) ,

URS0000EED94C_9606 lncRNA 835 1

Ensembl: ENST00000560700 (view in UCSC) ,

URS0000EF6797_9606 lncRNA 506 1

Ensembl: ENST00000654967 (view in UCSC) ,

LINC02622 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02622 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02622 Gene

No ASD Table

Relevant External Links for LINC02622 Gene

GeneLoc Exon Structure for
LINC02622

Expression for LINC02622 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02622 Gene

Orthologs for LINC02622 Gene

Evolution for LINC02622 Gene

ENSEMBL:
Gene Tree for LINC02622 (if available)
TreeFam:
Gene Tree for LINC02622 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02622

No data available for Orthologs for LINC02622 Gene

Paralogs for LINC02622 Gene

No data available for Paralogs for LINC02622 Gene

Variants for LINC02622 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02622 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02622 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02622
Leiden Open Variation Database (LOVD)
LINC02622

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02622 Gene

Disorders for LINC02622 Gene

Additional Disease Information for LINC02622

Open Targets Platform
Open Targets Platform

No disorders were found for LINC02622 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02622 Gene

Publications for LINC02622 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for LINC02622 Gene

Products for LINC02622 Gene

Sources for LINC02622 Gene