Aliases for LINC02622 Gene

Subcategory (RNA class) for LINC02622 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC02622 Gene

  • Long Intergenic Non-Protein Coding RNA 2622 2 3 5
  • HSALNG0078683 167
  • NONHSAG006149 92
  • Lnc-SGPL1-2 168
  • LINC02622 2

External Ids for LINC02622 Gene

Previous GeneCards Identifiers for LINC02622 Gene

  • GC10P070944
  • GC10P070945
  • GC10P070946

Summaries for LINC02622 Gene

GeneCards Summary for LINC02622 Gene

LINC02622 (Long Intergenic Non-Protein Coding RNA 2622) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02622 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02622 Gene

Genomics for LINC02622 Gene

GeneHancer (GH) Regulatory Elements for LINC02622 Gene

Promoters and enhancers for LINC02622 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J070940 Enhancer 0.6 Ensembl ENCODE 500.7 +1.9 1949 1.2 NRF1 MYNN NFIC NFIB NR3C1 EZH2 LINC02622 UNC5B-AS1 PCBD1 UNC5B ENSG00000285300 lnc-SGPL1-3
GH10J070939 Enhancer 0.3 Ensembl 500.7 +0.7 665 0.2 PRDM4 LINC02622 PCBD1 ENSG00000285300 lnc-SGPL1-3
GH10J070950 Enhancer 0.6 Ensembl ENCODE 0.4 +12.6 12613 2.6 REST MIER1 MEF2B EHMT2 ZFP36 EBF1 LINC02622 lnc-SGPL1-3 ENSG00000285300
GH10J070943 Enhancer 0.3 Ensembl 0.7 +4.9 4865 0.2 HIC1 LINC02622 ENSG00000285300 lnc-SGPL1-3
GH10J070967 Enhancer 0.5 Ensembl 0.3 +29.1 29065 1.4 RFX1 RXRA BMI1 EGR1 BHLHE40 GATA2 FOS PKNOX1 POLR2A SCRT2 lnc-SGPL1-3 LINC02622 ENSG00000285300
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02622 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02622 Gene

Genomic Locations for LINC02622 Gene
chr10:70,939,036-70,955,947
(GRCh38/hg38)
Size:
16,912 bases
Orientation:
Plus strand
chr10:72,698,810-72,715,398
(GRCh37/hg19)
Size:
16,589 bases
Orientation:
Plus strand

Genomic View for LINC02622 Gene

Genes around LINC02622 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02622 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02622 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02622 Gene

Proteins for LINC02622 Gene

Post-translational modifications for LINC02622 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02622 Gene

Domains & Families for LINC02622 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02622 Gene

Function for LINC02622 Gene

Phenotypes From GWAS Catalog for LINC02622 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02622 Gene

Localization for LINC02622 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02622 Gene

Pathways & Interactions for LINC02622 Gene

PathCards logo

SuperPathways for LINC02622 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02622 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02622 Gene

Drugs & Compounds for LINC02622 Gene

No Compound Related Data Available

Transcripts for LINC02622 Gene

mRNA/cDNA for LINC02622 Gene

10 RNACentral transcripts :
2 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
1 LncBook transcripts :
5 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02622 Gene

No ASD Table

Relevant External Links for LINC02622 Gene

GeneLoc Exon Structure for
LINC02622

Expression for LINC02622 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02622 Gene

Orthologs for LINC02622 Gene

Evolution for LINC02622 Gene

ENSEMBL:
Gene Tree for LINC02622 (if available)
TreeFam:
Gene Tree for LINC02622 (if available)

No data available for Orthologs for LINC02622 Gene

Paralogs for LINC02622 Gene

No data available for Paralogs for LINC02622 Gene

Variants for LINC02622 Gene

Additional dbSNP identifiers (rs#s) for LINC02622 Gene

Additional Variant Information for LINC02622 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02622

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02622 Gene

Disorders for LINC02622 Gene

No disorders were found for LINC02622 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02622 Gene

Publications for LINC02622 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54

No data available for Mastermind for LINC02622 Gene

Products for LINC02622 Gene

Sources for LINC02622 Gene