Aliases for LINC02620 Gene

Subcategory (RNA class) for LINC02620 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC02620 Gene

  • Long Intergenic Non-Protein Coding RNA 2620 2 3 5
  • NONHSAG006798 92
  • HSALNG0080429 167
  • Lnc-ITPRIP-2 168
  • LINC02620 2

External Ids for LINC02620 Gene

Summaries for LINC02620 Gene

GeneCards Summary for LINC02620 Gene

LINC02620 (Long Intergenic Non-Protein Coding RNA 2620) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02620 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02620 Gene

Genomics for LINC02620 Gene

GeneHancer (GH) Regulatory Elements for LINC02620 Gene

Promoters and enhancers for LINC02620 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J104472 Enhancer 0.6 ENCODE 0.4 +7.7 7678 0.2 GATAD2B CTBP1 FOS NEUROD1 JUND GATA3 FOXA1 DPF2 ESR1 JUN lnc-ITPRIP-5 LINC02620
GH10J104473 Enhancer 0.5 ENCODE 0.4 +6.8 6818 0.2 JUND GATA3 TAL1 POLR2A ESR1 SETDB1 FOXA1 lnc-ITPRIP-5 LINC02620
GH10J104488 Enhancer 0.3 Ensembl 0.4 -8.0 -8025 0.8 GLIS1 FOS piR-52294-019 LINC02620
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02620 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02620 Gene

Genomic Locations for LINC02620 Gene
chr10:104,474,874-104,480,376
(GRCh38/hg38)
Size:
5,503 bases
Orientation:
Minus strand
chr10:106,234,697-106,240,032
(GRCh37/hg19)
Size:
5,336 bases
Orientation:
Minus strand

Genomic View for LINC02620 Gene

Genes around LINC02620 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02620 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02620 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02620 Gene

Proteins for LINC02620 Gene

Post-translational modifications for LINC02620 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02620 Gene

Domains & Families for LINC02620 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02620 Gene

Function for LINC02620 Gene

Phenotypes From GWAS Catalog for LINC02620 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02620 Gene

Localization for LINC02620 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02620 Gene

Pathways & Interactions for LINC02620 Gene

PathCards logo

SuperPathways for LINC02620 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02620 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02620 Gene

Drugs & Compounds for LINC02620 Gene

No Compound Related Data Available

Transcripts for LINC02620 Gene

mRNA/cDNA for LINC02620 Gene

4 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
1 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02620 Gene

No ASD Table

Relevant External Links for LINC02620 Gene

GeneLoc Exon Structure for
LINC02620

Expression for LINC02620 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02620

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02620 Gene

Orthologs for LINC02620 Gene

Evolution for LINC02620 Gene

ENSEMBL:
Gene Tree for LINC02620 (if available)
TreeFam:
Gene Tree for LINC02620 (if available)

No data available for Orthologs for LINC02620 Gene

Paralogs for LINC02620 Gene

No data available for Paralogs for LINC02620 Gene

Variants for LINC02620 Gene

Additional dbSNP identifiers (rs#s) for LINC02620 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02620 Gene

Variant ID Type Subtype PubMed ID
esv2740384 CNV deletion 23290073

Additional Variant Information for LINC02620 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02620

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02620 Gene

Disorders for LINC02620 Gene

No disorders were found for LINC02620 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02620 Gene

Publications for LINC02620 Gene

No publications were found for LINC02620 Gene.

No data available for Mastermind for LINC02620 Gene

Products for LINC02620 Gene

Sources for LINC02620 Gene