Aliases for LINC02617 Gene

Subcategory (RNA class) for LINC02617 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC02617 Gene

  • Long Intergenic Non-Protein Coding RNA 2617 2 3 5
  • Lnc-KLRC4-KLRK1-2 170
  • NONHSAG010480 94
  • HSALNG0089220 169

External Ids for LINC02617 Gene

Previous GeneCards Identifiers for LINC02617 Gene

  • GC12M012540
  • GC12M012757
  • GC12M012317

Summaries for LINC02617 Gene

GeneCards Summary for LINC02617 Gene

LINC02617 (Long Intergenic Non-Protein Coding RNA 2617) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02617 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02617 Gene

Genomics for LINC02617 Gene

GeneHancer (GH) Regulatory Elements for LINC02617 Gene

Promoters and enhancers for LINC02617 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J010333 Promoter 0.4 Ensembl 755.1 +1.8 1791 4.2 PRDM1 LINC02617 piR-37432-023 piR-37656-050 piR-32559-079 STYK1 KLRA1P KLRC4 SLC25A39P2 KLRD1
GH12J010339 Enhancer 0.3 Ensembl 750.6 -1.4 -1409 1.4 JUN JUND LINC02617 piR-38344-027 piR-32559-079 STYK1 KLRK1 KLRC3 KLRC1 KLRD1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02617 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02617 Gene

Genomic Locations for LINC02617 Gene
chr12:10,332,860-10,338,292
(GRCh38/hg38)
Size:
5,433 bases
Orientation:
Minus strand
chr12:10,485,460-10,490,891
(GRCh37/hg19)
Size:
5,432 bases
Orientation:
Minus strand

Genomic View for LINC02617 Gene

Genes around LINC02617 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02617 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02617 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02617 Gene

Proteins for LINC02617 Gene

Post-translational modifications for LINC02617 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02617 Gene

Domains & Families for LINC02617 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02617 Gene

Function for LINC02617 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02617 Gene

Localization for LINC02617 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02617 Gene

Pathways & Interactions for LINC02617 Gene

PathCards logo

SuperPathways for LINC02617 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02617 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02617 Gene

Drugs & Compounds for LINC02617 Gene

No Compound Related Data Available

Transcripts for LINC02617 Gene

mRNA/cDNA for LINC02617 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(1) LncBook transcripts :
(1) NONCODE transcripts :
(1) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02617 Gene

No ASD Table

Relevant External Links for LINC02617 Gene

GeneLoc Exon Structure for
LINC02617
ECgene alternative splicing isoforms for
LINC02617

Expression for LINC02617 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02617 Gene

Orthologs for LINC02617 Gene

Evolution for LINC02617 Gene

ENSEMBL:
Gene Tree for LINC02617 (if available)
TreeFam:
Gene Tree for LINC02617 (if available)

No data available for Orthologs for LINC02617 Gene

Paralogs for LINC02617 Gene

No data available for Paralogs for LINC02617 Gene

Variants for LINC02617 Gene

Sequence variations from dbSNP and Humsavar for LINC02617 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000044046 -- 10,333,970(-) G/A intron_variant
rs1000221139 -- 10,335,932(-) A/C intron_variant
rs1000387209 -- 10,332,380(-) G/A downstream_transcript_variant
rs1001015077 -- 10,340,135(-) T/G upstream_transcript_variant
rs1001143568 -- 10,339,599(-) C/G upstream_transcript_variant

Additional Variant Information for LINC02617 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02617

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02617 Gene

Disorders for LINC02617 Gene

No disorders were found for LINC02617 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02617 Gene

Publications for LINC02617 Gene

  1. Microarray Analysis of Long Non-coding RNA Expression Profile Associated with 5-Fluorouracil-Based Chemoradiation Resistance in Colorectal Cancer Cells. (PMID: 25921151) Xiong W … Li WH (Asian Pacific journal of cancer prevention : APJCP 2015) 2 3 56
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56

No data available for External Links for LINC02617 Gene

Products for LINC02617 Gene

Sources for LINC02617 Gene