Aliases for LINC02613 Gene

Subcategory (RNA class) for LINC02613 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC02613 Gene

  • Long Intergenic Non-Protein Coding RNA 2613 2 3 5
  • NONHSAG027513 92
  • HSALNG0014305 167
  • Lnc-ATL2-1 168
  • LINC02613 2

External Ids for LINC02613 Gene

Previous GeneCards Identifiers for LINC02613 Gene

  • GC02M038458
  • GC02M038408

Summaries for LINC02613 Gene

GeneCards Summary for LINC02613 Gene

LINC02613 (Long Intergenic Non-Protein Coding RNA 2613) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02613 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02613 Gene

Genomics for LINC02613 Gene

GeneHancer (GH) Regulatory Elements for LINC02613 Gene

Promoters and enhancers for LINC02613 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J038514 Promoter/Enhancer 1.3 Ensembl ENCODE 520 +0.5 536 1.9 NRF1 ZBTB11 REST HES1 CTBP1 NFRKB TAF9B KDM4B ZNF341 RBM25 LINC02613 CDC42EP3 RPLP0P6 ATL2 lnc-HNRNPLL-6
GH02J038516 Enhancer 0.4 Ensembl 518.3 -1.3 -1267 0.8 ADNP GATA1 GATA2 CBFA2T3 LINC02613 ATL2 piR-57460-372
GH02J038432 Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 17.6 +83.1 83133 2.4 EP300 NCOR1 ZIC2 KDM6A ZBTB25 TGIF2 SMARCC2 SKI TEAD1 ZBTB26 LINC01883 ATL2 LINC02613 SOS1 GALM ENSG00000232518 DHX57 lnc-ATL2-3
GH02J038435 Enhancer 1.4 Ensembl ENCODE dbSUPER 18.4 +75.6 75633 9.4 EP300 FOXK2 ZSCAN5C SP1 NCOR1 TEAD4 ZNF639 ZNF10 ZIC2 KDM6A LINC02613 ATL2 GALM ENSG00000232518 ENSG00000229160 lnc-ATL2-3 LINC01883 piR-57133-333
GH02J038507 Enhancer 1.1 Ensembl ENCODE 17.6 +6.8 6755 2.4 CTCF ZSCAN5C JUND TCF7 REST ZBTB25 MYC RAD21 SKI TRIM22 LINC02613 ATL2 lnc-HNRNPLL-6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02613 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02613 Gene

Genomic Locations for LINC02613 Gene
chr2:38,403,830-38,515,934
(GRCh38/hg38)
Size:
112,105 bases
Orientation:
Minus strand
chr2:38,633,861-38,742,882
(GRCh37/hg19)
Size:
109,022 bases
Orientation:
Minus strand

Genomic View for LINC02613 Gene

Genes around LINC02613 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02613 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02613 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02613 Gene

Proteins for LINC02613 Gene

Post-translational modifications for LINC02613 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02613 Gene

Domains & Families for LINC02613 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02613 Gene

Function for LINC02613 Gene

Phenotypes From GWAS Catalog for LINC02613 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02613 Gene

Localization for LINC02613 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02613 Gene

Pathways & Interactions for LINC02613 Gene

PathCards logo

SuperPathways for LINC02613 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02613 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02613 Gene

Drugs & Compounds for LINC02613 Gene

No Compound Related Data Available

Transcripts for LINC02613 Gene

mRNA/cDNA for LINC02613 Gene

24 RNACentral transcripts :
1 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
12 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
6 NONCODE transcripts :
7 LncBook transcripts :
12 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02613 Gene

No ASD Table

Relevant External Links for LINC02613 Gene

GeneLoc Exon Structure for
LINC02613

Expression for LINC02613 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02613 Gene

Orthologs for LINC02613 Gene

Evolution for LINC02613 Gene

ENSEMBL:
Gene Tree for LINC02613 (if available)
TreeFam:
Gene Tree for LINC02613 (if available)

No data available for Orthologs for LINC02613 Gene

Paralogs for LINC02613 Gene

No data available for Paralogs for LINC02613 Gene

Variants for LINC02613 Gene

Additional dbSNP identifiers (rs#s) for LINC02613 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02613 Gene

Variant ID Type Subtype PubMed ID
esv1091303 CNV deletion 17803354
esv2666882 CNV deletion 23128226
esv2719946 CNV deletion 23290073
esv2719947 CNV deletion 23290073
esv2719948 CNV deletion 23290073
esv3555256 CNV deletion 23714750
esv3590415 CNV loss 21293372
nsv1150994 CNV deletion 26484159
nsv213192 CNV deletion 16902084
nsv522259 CNV loss 19592680
nsv526489 CNV loss 19592680
nsv961399 CNV duplication 23825009
nsv9646 CNV loss 18304495

Additional Variant Information for LINC02613 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02613

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02613 Gene

Disorders for LINC02613 Gene

No disorders were found for LINC02613 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02613 Gene

Publications for LINC02613 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 54
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 54

No data available for Mastermind for LINC02613 Gene

Products for LINC02613 Gene

Sources for LINC02613 Gene