Aliases for LINC02606 Gene

Subcategory (RNA class) for LINC02606 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC02606 Gene

  • Long Intergenic Non-Protein Coding RNA 2606 2 3 5
  • HSALNG0000694 169
  • NONHSAG000315 94
  • Lnc-GPR157-7 170

External Ids for LINC02606 Gene

Previous GeneCards Identifiers for LINC02606 Gene

  • GC01M009425

Summaries for LINC02606 Gene

GeneCards Summary for LINC02606 Gene

LINC02606 (Long Intergenic Non-Protein Coding RNA 2606) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02606 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02606 Gene

Genomics for LINC02606 Gene

GeneHancer (GH) Regulatory Elements for LINC02606 Gene

Promoters and enhancers for LINC02606 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J009434 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 +0.7 719 11.2 SIN3A ZBTB6 FOXA1 RBPJ USF2 NR2F1 NR2F6 ATF1 CREB1 MIXL1 LINC02606 GPR157 MIR34A SPSB1 RNA5SP40
GH01J009428 Promoter/Enhancer 2.1 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +11.3 11288 2.3 ZNF24 ZBTB40 SP1 CTCF SREBF1 SIX5 FOXA1 MLX RBPJ POLR2A RERE H6PD GPR157 ENSG00000284652 RNA5SP40 LINC02606
GH01J009447 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -9.0 -8960 3.4 RAD21 ZNF121 PPARG CREB1 ZIC2 GATAD2A ZNF766 FOXA2 ZFHX2 GATA3 lnc-SPSB1-1 LINC02606 lnc-CLSTN1-3
GH01J009412 Enhancer 1.3 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 0.3 +26.7 26737 2.9 SP1 RELA NFIB ZNF148 MLLT1 CREM ZBED1 IKZF1 CEBPA PRDM10 piR-43105-005 LINC02606 lnc-GPR157-6
GH01J009425 Enhancer 1 ENCODE dbSUPER 0.4 +14.2 14195 1.4 ZNF24 SP1 MYC ETV6 RELA L3MBTL2 MAX RAD21 NKRF POLR2A GPR157 ENSG00000284652 RNA5SP40 LINC02606
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02606 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02606 Gene

Genomic Locations for LINC02606 Gene
chr1:9,414,563-9,440,564
(GRCh38/hg38)
Size:
26,002 bases
Orientation:
Minus strand
chr1:9,486,715-9,489,055
(GRCh37/hg19)
Size:
2,341 bases
Orientation:
Minus strand

Genomic View for LINC02606 Gene

Genes around LINC02606 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02606 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02606 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02606 Gene

Proteins for LINC02606 Gene

Post-translational modifications for LINC02606 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02606 Gene

Domains & Families for LINC02606 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02606 Gene

Function for LINC02606 Gene

Phenotypes From GWAS Catalog for LINC02606 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02606 Gene

Localization for LINC02606 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02606 Gene

Pathways & Interactions for LINC02606 Gene

PathCards logo

SuperPathways for LINC02606 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02606 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02606 Gene

Drugs & Compounds for LINC02606 Gene

No Compound Related Data Available

Transcripts for LINC02606 Gene

mRNA/cDNA for LINC02606 Gene

(2) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(11) RNACentral transcripts :
(5) NONCODE transcripts :
(3) LncBook transcripts :
(9) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02606 Gene

No ASD Table

Relevant External Links for LINC02606 Gene

GeneLoc Exon Structure for
LINC02606
ECgene alternative splicing isoforms for
LINC02606

Expression for LINC02606 Gene

SOURCE GeneReport for Unigene cluster for LINC02606 Gene:

Hs.568596
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02606 Gene

Orthologs for LINC02606 Gene

Evolution for LINC02606 Gene

ENSEMBL:
Gene Tree for LINC02606 (if available)
TreeFam:
Gene Tree for LINC02606 (if available)

No data available for Orthologs for LINC02606 Gene

Paralogs for LINC02606 Gene

No data available for Paralogs for LINC02606 Gene

Variants for LINC02606 Gene

Sequence variations from dbSNP and Humsavar for LINC02606 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000012278 -- 9,428,986(-) A/T genic_upstream_transcript_variant, non_coding_transcript_variant, upstream_transcript_variant
rs1000046108 -- 9,428,751(-) A/C intron_variant
rs1000130815 -- 9,430,804(-) G/A upstream_transcript_variant
rs1001017673 -- 9,427,670(-) A/G intron_variant
rs1001040573 -- 9,427,226(-) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC02606 Gene

Variant ID Type Subtype PubMed ID
nsv1013224 CNV gain 25217958

Additional Variant Information for LINC02606 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02606

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC02606 Gene

Disorders for LINC02606 Gene

No disorders were found for LINC02606 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02606 Gene

Publications for LINC02606 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56

No data available for External Links for LINC02606 Gene

Products for LINC02606 Gene

Sources for LINC02606 Gene