Aliases for LINC02595 Gene

Subcategory (RNA class) for LINC02595 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for LINC02595 Gene

  • Long Intergenic Non-Protein Coding RNA 2595 2 3 5
  • LINC02595 2 5
  • NONHSAG054345.2 91
  • Lnc-CXorf36-46 165
  • HSALNG0137607 164
  • HSALNG0137593 164

External Ids for LINC02595 Gene

Summaries for LINC02595 Gene

GeneCards Summary for LINC02595 Gene

LINC02595 (Long Intergenic Non-Protein Coding RNA 2595) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for LINC02595 Gene

Additional gene information for LINC02595 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for LINC02595 Gene

Genomics for LINC02595 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02595 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ045849 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 +1.4 1409 5.8 HNRNPL PRDM10 KDM1A CTCF ZNF692 FOXA1 ZIC2 ZSCAN4 PATZ1 POLR2A LINC02595 MN298678-164 KRBOX4 DIPK2B
GH0XJ045841 Enhancer 0.6 Ensembl ENCODE 0.4 +9.6 9609 4.2 FOXA1 RAD21 CTCF FOXA2 GATA3 SMC3 LINC02595 MN298678-164 MIR222HG DIPK2B KRBOX4
GH0XJ045845 Enhancer 0.3 Ensembl 0.4 +6.7 6709 0.4 SPI1 MN298678-164 LINC02595 MIR222HG DIPK2B KRBOX4
GH0XJ045855 Enhancer 0.2 Ensembl 0.7 -3.2 -3191 0.2 LINC02595 ENSG00000212347 DIPK2B KRBOX4
GH0XJ045857 Enhancer 0.2 Ensembl 0.4 -5.1 -5091 0.4 ENSG00000212347 LINC02595 KRBOX4 DIPK2B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02595 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02595 Gene

Genomic Locations for LINC02595 Gene
chrX:45,828,072-45,852,110
(GRCh38/hg38)
Size:
24,039 bases
Orientation:
Minus strand
chrX:45,707,328-45,710,920
(GRCh37/hg19)
Size:
3,593 bases
Orientation:
Minus strand

Genomic View for LINC02595 Gene

Genes around LINC02595 on UCSC Golden Path with GeneCards custom track
LINC02595 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02595 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02595 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02595 Gene

Proteins for LINC02595 Gene

Post-translational modifications for LINC02595 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02595 Gene

Domains & Families for LINC02595 Gene

Gene Families for LINC02595 Gene

genes like me logo Genes that share domains with LINC02595: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02595 Gene

Function for LINC02595 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02595 Gene

Localization for LINC02595 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02595 Gene

Pathways & Interactions for LINC02595 Gene

PathCards logo

SuperPathways for LINC02595 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02595 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02595 Gene

Drugs & Compounds for LINC02595 Gene

No Compound Related Data Available

Transcripts for LINC02595 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02595 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000B571D_9606 lncRNA 375 4

HGNC: 53946,

RefSeq: NR_125365,

LNCipedia: lnc-CXorf36-46:3,

NONCODE: NONHSAT136813.2,

URS0000EF06C9_9606 lncRNA 1458 1

Ensembl: ENST00000456532 (view in UCSC) ,

URS0000EF23EB_9606 lncRNA 689 1

Ensembl: ENST00000666464 (view in UCSC) ,

URS0000EF5C2B_9606 lncRNA 676 1

Ensembl: ENST00000667331 (view in UCSC) ,

URS0000D5A8DE_9606 lncRNA 417 2

LncBook: HSALNT0282164,

LNCipedia: lnc-CXorf36-46:2,

LINC02595 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02595 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02595 Gene

No ASD Table

Relevant External Links for LINC02595 Gene

GeneLoc Exon Structure for
LINC02595

Expression for LINC02595 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02595

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02595 Gene

Orthologs for LINC02595 Gene

Evolution for LINC02595 Gene

ENSEMBL:
Gene Tree for LINC02595 (if available)
TreeFam:
Gene Tree for LINC02595 (if available)

No data available for Orthologs for LINC02595 Gene

Paralogs for LINC02595 Gene

No data available for Paralogs for LINC02595 Gene

Variants for LINC02595 Gene

Additional dbSNP identifiers (rs#s) for LINC02595 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02595 Gene

Variant ID Type Subtype PubMed ID
nsv526411 CNV gain 19592680

Additional Variant Information for LINC02595 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02595

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02595 Gene

Disorders for LINC02595 Gene

No disorders were found for LINC02595 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02595 Gene

Publications for LINC02595 Gene

  1. Long non-coding RNA expression profiles reveals AK098783 is a biomarker to predict poor prognosis in patients with colorectal cancer. (PMID: 29590393) Wang X … Ge X (Japanese journal of clinical oncology 2018) 2 3

No data available for Mastermind for LINC02595 Gene

Products for LINC02595 Gene

Sources for LINC02595 Gene