Aliases for LINC02593 Gene

Subcategory (RNA class) for LINC02593 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02593 Gene

  • Long Intergenic Non-Protein Coding RNA 2593 2 3 5
  • LINC02593 2 5 165
  • NONHSAG000058.2 91
  • NONHSAG000059.2 91
  • HSALNG0000054 164
  • HSALNG0000055 164
  • AL645608.1 2

External Ids for LINC02593 Gene

Previous GeneCards Identifiers for LINC02593 Gene

  • GC01M000917
  • GC01M000918

Summaries for LINC02593 Gene

GeneCards Summary for LINC02593 Gene

LINC02593 (Long Intergenic Non-Protein Coding RNA 2593) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02593 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02593 Gene

Genomics for LINC02593 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02593 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02593 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02593 Gene

Genomic Locations for LINC02593 Gene
chr1:914,888-925,604
(GRCh38/hg38)
Size:
10,717 bases
Orientation:
Minus strand
chr1:852,245-856,396
(GRCh37/hg19)
Size:
4,152 bases
Orientation:
Minus strand

Genomic View for LINC02593 Gene

Genes around LINC02593 on UCSC Golden Path with GeneCards custom track
LINC02593 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02593 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02593 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02593 Gene

Proteins for LINC02593 Gene

Post-translational modifications for LINC02593 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02593 Gene

Domains & Families for LINC02593 Gene

Gene Families for LINC02593 Gene

genes like me logo Genes that share domains with LINC02593: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02593 Gene

Function for LINC02593 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02593 Gene

Localization for LINC02593 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02593 Gene

Pathways & Interactions for LINC02593 Gene

PathCards logo

SuperPathways for LINC02593 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02593 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02593 Gene

Drugs & Compounds for LINC02593 Gene

No Compound Related Data Available

Transcripts for LINC02593 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02593 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075EEDF_9606 lncRNA 1506 4

HGNC: 53933,

RefSeq: NR_026874,

LncBook: HSALNT0000250,

LNCipedia: LINC02593:37,

URS000075A095_9606 lncRNA 1446 3

RefSeq: NR_122045,

LncBook: HSALNT0000251,

LNCipedia: LINC02593:38,

URS0000033DB4_9606 lncRNA 1389 3

Ensembl: ENST00000417705 (view in UCSC) ,

LNCipedia: LINC02593:36,

NONCODE: NONHSAT000203.2,

URS00008B9352_9606 lncRNA 795 3

LncBook: HSALNT0000256,

LNCipedia: LINC02593:32,

NONCODE: NONHSAT000210.2,

URS00008B5643_9606 lncRNA 665 3

LncBook: HSALNT0000255,

LNCipedia: LINC02593:34,

NONCODE: NONHSAT000209.2,

LINC02593 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02593 Gene

1 REFSEQ mRNAs :
6 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02593 Gene

No ASD Table

Relevant External Links for LINC02593 Gene

GeneLoc Exon Structure for
LINC02593

Expression for LINC02593 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02593

SOURCE GeneReport for Unigene cluster for LINC02593 Gene:

Hs.200644
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02593 Gene

Orthologs for LINC02593 Gene

Evolution for LINC02593 Gene

ENSEMBL:
Gene Tree for LINC02593 (if available)
TreeFam:
Gene Tree for LINC02593 (if available)

No data available for Orthologs for LINC02593 Gene

Paralogs for LINC02593 Gene

No data available for Paralogs for LINC02593 Gene

Variants for LINC02593 Gene

Additional dbSNP identifiers (rs#s) for LINC02593 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02593 Gene

Variant ID Type Subtype PubMed ID
dgv1n111 CNV duplication 26073780
dgv2n67 CNV gain 20364138
dgv3n111 CNV duplication 26073780
dgv5n100 CNV gain 25217958
dgv6n54 CNV loss 21841781
esv2762302 CNV gain 21179565
esv3584981 CNV loss 21293372
esv3584982 CNV gain 21293372
nsv10161 CNV gain+loss 18304495
nsv428334 CNV gain 18775914
nsv482937 CNV loss 15286789
nsv509035 CNV insertion 20534489
nsv517709 CNV gain+loss 19592680
nsv544895 CNV loss 21841781
nsv832980 CNV gain 17160897
nsv950451 CNV deletion 24416366

Additional Variant Information for LINC02593 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02593

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02593 Gene

Disorders for LINC02593 Gene

Additional Disease Information for LINC02593

No disorders were found for LINC02593 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02593 Gene

Publications for LINC02593 Gene

  1. Identification of a five-lncRNA signature for predicting the risk of tumor recurrence in patients with breast cancer. (PMID: 29707762) Li J … Xu C (International journal of cancer 2018) 2 3
  2. TNIP2 is a Hub Protein in the NF-κB Network with Both Protein and RNA Mediated Interactions. (PMID: 27609421) Banks CA … Washburn MP (Molecular & cellular proteomics : MCP 2016) 3
  3. Why do cellular proteins linked to K63-polyubiquitin chains not associate with proteasomes? (PMID: 23314748) Nathan JA … Goldberg AL (The EMBO journal 2013) 3
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for LINC02593 Gene

Sources for LINC02593 Gene