Aliases for LINC02584 Gene

Data sources for LINC02584 Gene:

RNA type for LINC02584 Gene

lncRNA

Aliases for LINC02584 Gene

External Ids for LINC02584 Gene

Previous HGNC Symbols for LINC02584 Gene

  • C11orf78
  • NCRNA00224
  • ANO1-AS2

Summaries for LINC02584 Gene

GeneCards Summary for LINC02584 Gene

LINC02584 (Long Intergenic Non-Protein Coding RNA 2584) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for LINC02584 Gene

Additional gene information for LINC02584 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for LINC02584 Gene

Genomics for LINC02584 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02584 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J070082 Enhancer 0.6 dbSUPER 250.7 +0.5 486 4.6 YY1 REST CTCF RXRA RAD21 HNF4A MAX SP1 SMC3 SP5 LINC02584 ANO1-AS1 LINC02753 ANO1 RF00026-180 RNU6-1175P FADD
GH11J070077 Promoter/Enhancer 1.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.4 +5.4 5376 4.4 NFIC ZIC2 REST CTCF RAD21 JUND ZNF664 ZNF687 PKNOX1 MNT ANO1 LINC02753 RNU6-1175P RF00026-180 LINC02584 FADD
GH11J070110 Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 -26.9 -26880 3.2 MYC IKZF1 ZIC2 FEZF1 TBP MNT KLF9 ZNF623 SP2 RUNX1 ENSG00000255143 LINC02584 FADD ANO1
GH11J070072 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 +11.6 11594 1.8 BCL11A ATF2 JUNB SP7 ZBED1 NANOG EGR2 CREM EED RUNX3 RNU6-1175P RF00026-180 LINC02753 ANO1 HSALNG0085407 lnc-ANO1-2 LINC02584 FADD
GH11J070092 Enhancer 0.9 Ensembl CraniofacialAtlas dbSUPER 0.4 -5.7 -5727 0.7 ZSCAN16 ZIC2 FEZF1 ZNF341 PRDM10 ZFP69B CEBPB ZNF692 LINC02584 ENSG00000255143 ANO1 FADD
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02584 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02584 Gene

Latest Assembly
chr11:70,071,678-70,085,321
(GRCh38/hg38)
Size:
13,644 bases
Orientation:
Minus strand

Previous Assembly
chr11:69,918,540-69,921,454
(GRCh37/hg19 by Entrez Gene)
Size:
2,915 bases
Orientation:
Minus strand

chr11:69,918,540-69,921,539
(GRCh37/hg19 by Ensembl)
Size:
3,000 bases
Orientation:
Minus strand

Genomic View for LINC02584 Gene

Genes around LINC02584 on UCSC Golden Path with GeneCards custom track
LINC02584 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02584 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02584 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02584 Gene

Proteins for LINC02584 Gene

Post-translational modifications for LINC02584 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02584 Gene

Domains & Families for LINC02584 Gene

Gene Families for LINC02584 Gene

genes like me logo Genes that share domains with LINC02584: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02584 Gene

Function for LINC02584 Gene

Phenotypes From GWAS Catalog for LINC02584 Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02584 Gene

Localization for LINC02584 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02584 Gene

Pathways & Interactions for LINC02584 Gene

PathCards logo

SuperPathways for LINC02584 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02584 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02584 Gene

Drugs & Compounds for LINC02584 Gene

No Compound Related Data Available

Transcripts for LINC02584 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02584 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000561771_9606 lncRNA 1004 4

Ensembl: ENST00000531347 (view in UCSC) ,

LncBook: HSALNT0177705,

LNCipedia: LINC02584:7,

NONCODE: NONHSAT022629.2,

URS000075BC24_9606 lncRNA 804 3

RefSeq: NR_103835,

LNCipedia: LINC02584:9,

NONCODE: NONHSAT022630.2,

URS0000517145_9606 lncRNA 501 3

Ensembl: ENST00000533327 (view in UCSC) ,

LncBook: HSALNT0177707,

LNCipedia: LINC02584:8,

URS00008B2125_9606 lncRNA 1104 3

LncBook: HSALNT0177709,

LNCipedia: LINC02584:6,

NONCODE: NONHSAT022631.2,

URS00009BD2B8_9606 lncRNA 420 2

LncBook: HSALNT0177710,

NONCODE: NONHSAT160481.1,

LINC02584 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02584 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02584 Gene

No ASD Table

Relevant External Links for LINC02584 Gene

GeneLoc Exon Structure for
LINC02584

Expression for LINC02584 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02584

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02584 Gene

Orthologs for LINC02584 Gene

Evolution for LINC02584 Gene

ENSEMBL:
Gene Tree for LINC02584 (if available)
TreeFam:
Gene Tree for LINC02584 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02584

No data available for Orthologs for LINC02584 Gene

Paralogs for LINC02584 Gene

No data available for Paralogs for LINC02584 Gene

Variants for LINC02584 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02584 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02584 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02584
Leiden Open Variation Database (LOVD)
LINC02584

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02584 Gene

Disorders for LINC02584 Gene

Additional Disease Information for LINC02584

No disorders were found for LINC02584 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02584 Gene

Publications for LINC02584 Gene

  1. Investigating the regulatory function of the ANO1-AS2 on the ANO1 gene in infertile men with asthenozoospermia and terato-asthenozoospermia. (PMID: 32916161) Saberiyan M … Teimori H (Experimental and molecular pathology 2020) 3

Products for LINC02584 Gene

Sources for LINC02584 Gene