Aliases for LINC02579 Gene

Data sources for LINC02579 Gene:

Subcategory (RNA class) for LINC02579 Gene

lncRNA

Aliases for LINC02579 Gene

External Ids for LINC02579 Gene

Summaries for LINC02579 Gene

GeneCards Summary for LINC02579 Gene

LINC02579 (Long Intergenic Non-Protein Coding RNA 2579) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02579 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02579 Gene

Genomics for LINC02579 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02579 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02579 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02579 Gene

Latest Assembly
chr2:64,605,653-64,622,373
(GRCh38/hg38)
Size:
16,721 bases
Orientation:
Plus strand

Previous Assembly
chr2:64,834,446-64,843,616
(GRCh37/hg19 by Entrez Gene)
Size:
9,171 bases
Orientation:
Plus strand

chr2:64,834,109-64,843,616
(GRCh37/hg19 by Ensembl)
Size:
9,508 bases
Orientation:
Plus strand

Genomic View for LINC02579 Gene

Genes around LINC02579 on UCSC Golden Path with GeneCards custom track
LINC02579 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02579 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02579 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02579 Gene

Proteins for LINC02579 Gene

Post-translational modifications for LINC02579 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02579 Gene

Domains & Families for LINC02579 Gene

Gene Families for LINC02579 Gene

genes like me logo Genes that share domains with LINC02579: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02579 Gene

Function for LINC02579 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02579 Gene

Localization for LINC02579 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02579 Gene

Pathways & Interactions for LINC02579 Gene

PathCards logo

SuperPathways for LINC02579 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02579 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02579 Gene

Drugs & Compounds for LINC02579 Gene

No Compound Related Data Available

Transcripts for LINC02579 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02579 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075DEC3_9606 lncRNA 1771 4

RefSeq: NR_034023,

LncBook: HSALNT0032721,

LNCipedia: LINC02579:10,

NONCODE: NONHSAT071125.2,

URS000042C64E_9606 lncRNA 1390 4

Ensembl: ENST00000445738 (view in UCSC) ,

LncBook: HSALNT0032720,

LNCipedia: LINC02579:8,

NONCODE: NONHSAT071124.2,

URS0000EF325A_9606 lncRNA 1822 1

Ensembl: ENST00000417695 (view in UCSC) ,

URS0000D59AF0_9606 lncRNA 1801 2

LncBook: HSALNT0032722,

LNCipedia: LINC02579:13,

URS0001BD9FC9_9606 lncRNA 8446 1

LncBook: HSALNT0032718,

LINC02579 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02579 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02579 Gene

No ASD Table

Relevant External Links for LINC02579 Gene

GeneLoc Exon Structure for
LINC02579

Expression for LINC02579 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02579

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02579 Gene

Orthologs for LINC02579 Gene

Evolution for LINC02579 Gene

ENSEMBL:
Gene Tree for LINC02579 (if available)
TreeFam:
Gene Tree for LINC02579 (if available)

No data available for Orthologs for LINC02579 Gene

Paralogs for LINC02579 Gene

No data available for Paralogs for LINC02579 Gene

Variants for LINC02579 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02579 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC02579 Gene

Variant ID Type Subtype PubMed ID
nsv2756 CNV deletion 18451855
nsv582127 CNV gain 21841781
nsv7313 OTHER inversion 18451855

Additional Variant Information for LINC02579 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02579

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02579 Gene

Disorders for LINC02579 Gene

Additional Disease Information for LINC02579

No disorders were found for LINC02579 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02579 Gene

Publications for LINC02579 Gene

  1. Epidermal long non-coding RNAs are regulated by ultraviolet irradiation. (PMID: 28942040) Kim KH … Lee TR (Gene 2017) 2 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC02579 Gene

Products for LINC02579 Gene

Sources for LINC02579 Gene