Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LINC02574 Gene

Subcategory (RNA class) for LINC02574 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC02574 Gene

  • Long Intergenic Non-Protein Coding RNA 2574 2 3 5
  • RP11-288L9.1 3

External Ids for LINC02574 Gene

Summaries for LINC02574 Gene

GeneCards Summary for LINC02574 Gene

LINC02574 (Long Intergenic Non-Protein Coding RNA 2574) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02574 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02574 Gene

Genomics for LINC02574 Gene

GeneHancer (GH) Regulatory Elements for LINC02574 Gene

Promoters and enhancers for LINC02574 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I027658 Promoter/Enhancer 2.3 FANTOM5 Ensembl ENCODE dbSUPER 550.8 +1.5 1470 6.3 HDGF PKNOX1 SMAD1 ARID4B E2F8 ZNF207 ZNF143 FOS DEK SP3 LINC02574 FGR GPN2 ACTG1P20 THEMIS2 ARID1A TRNAU1AP STX12 EYA3 XKR8
GH01I027666 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.8 -4.3 -4254 0.5 HDGF HDAC1 ATF1 RB1 NFRKB KLF17 NFXL1 EGR1 ATF7 CREM GC01P027670 LINC02574 IFI6
GH01I027668 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 0.4 -6.6 -6572 1.1 HDGF PKNOX1 ATF1 ARNT ARID4B SIN3A YBX1 ZNF2 TCF12 ARID2 ENSG00000225886 IFI6 GC01P027670 EYA3 GMEB1 PTAFR GPATCH3 ARID1A LINC02574
GH01I027649 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +12.1 12074 1.7 PKNOX1 ATF1 ZNF2 ZNF121 GLIS2 ATF7 KLF13 SP3 TSHZ1 ZNF518A LOC729973 FGR THEMIS2 SNHG12 EYA3 STX12 LINC02574
GH01I027655 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +6.7 6721 2 HDAC1 HDGF PKNOX1 SIN3A BATF EGR1 ZNF143 IKZF2 RUNX3 EGR2 FGR AHDC1 FAM76A RNU6-1245P SCARNA1 PPP1R8 THEMIS2 NUDC STX12 EYA3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC02574 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02574 Gene

Genomic Locations for LINC02574 Gene
chr1:27,660,328-27,662,722
(GRCh38/hg38)
Size:
2,395 bases
Orientation:
Minus strand
chr1:27,986,839-27,989,233
(GRCh37/hg19)

Genomic View for LINC02574 Gene

Genes around LINC02574 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02574 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02574 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for LINC02574 Gene

Proteins for LINC02574 Gene

Post-translational modifications for LINC02574 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02574 Gene

Domains & Families for LINC02574 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02574 Gene

Function for LINC02574 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02574 Gene

Localization for LINC02574 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02574 Gene

Pathways & Interactions for LINC02574 Gene

SuperPathways for LINC02574 Gene

No Data Available

Interacting Proteins for LINC02574 Gene

Gene Ontology (GO) - Biological Process for LINC02574 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02574 Gene

Drugs & Compounds for LINC02574 Gene

No Compound Related Data Available

Transcripts for LINC02574 Gene

mRNA/cDNA for LINC02574 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02574 Gene

No ASD Table

Relevant External Links for LINC02574 Gene

GeneLoc Exon Structure for
LINC02574
ECgene alternative splicing isoforms for
LINC02574

Expression for LINC02574 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02574 Gene

Orthologs for LINC02574 Gene

Evolution for LINC02574 Gene

ENSEMBL:
Gene Tree for LINC02574 (if available)
TreeFam:
Gene Tree for LINC02574 (if available)

No data available for Orthologs for LINC02574 Gene

Paralogs for LINC02574 Gene

No data available for Paralogs for LINC02574 Gene

Variants for LINC02574 Gene

Additional Variant Information for LINC02574 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02574

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02574 Gene

Disorders for LINC02574 Gene

No disorders were found for LINC02574 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02574 Gene

Publications for LINC02574 Gene

  1. Epidermal long non-coding RNAs are regulated by ultraviolet irradiation. (PMID: 28942040) Kim KH … Lee TR (Gene 2017) 2 3 58

Products for LINC02574 Gene

Sources for LINC02574 Gene

Content
Loading form....