Aliases for LINC02572 Gene

Data sources for LINC02572 Gene:

RNA type for LINC02572 Gene

lncRNA

Aliases for LINC02572 Gene

External Ids for LINC02572 Gene

Summaries for LINC02572 Gene

GeneCards Summary for LINC02572 Gene

LINC02572 (Long Intergenic Non-Protein Coding RNA 2572) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02572 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02572 Gene

Genomics for LINC02572 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02572 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J129876 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 255.6 -0.1 -136 2.4 ATF2 ZBTB10 REST TRIM22 BHLHE40 ZNF341 MNT RAD51 ELF1 SP2 LINC02572 ENSG00000286957 LOC105373616 RAB6C
GH02J129870 Enhancer 0.5 Ensembl 5.2 +6.7 6663 0.4 REST NRF1 ATF4 ATF3 KLF16 SOX6 ATF7 HMBOX1 CEBPG LINC02572 SMPD4 piR-45471-347 RAB6C
GH02J129885 Enhancer 0.3 Ensembl 4.4 -8.3 -8336 0.4 CTCF RAD21 HSALNG0018752 LINC02572 HSALNG0018753 RAB6C
GH02J129849 Enhancer 0.8 Ensembl ENCODE 0.3 +28.0 27985 0.6 ZNF654 YY1 CTCF REST ZNF592 TRIM22 THAP11 RAD21 SMC3 MAX piR-45471-347 LINC02572 RAB6C
GH02J129812 Enhancer 0.8 Ensembl ENCODE 0.2 +65.0 64963 2.2 NFIC CTCF FOSL2 BHLHE40 SPI1 MAX ELF1 IKZF1 RAD21 HLF HSALNG0018749 piR-43583-310 LINC02572 RAB6C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02572 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02572 Gene

Latest Assembly
chr2:129,786,628-129,877,664
(GRCh38/hg38)
Size:
91,037 bases
Orientation:
Minus strand

Previous Assembly
chr2:130,617,786-130,635,064
(GRCh37/hg19 by Entrez Gene)
Size:
17,279 bases
Orientation:
Minus strand

chr2:130,626,766-130,635,126
(GRCh37/hg19 by Ensembl)
Size:
8,361 bases
Orientation:
Minus strand

Genomic View for LINC02572 Gene

Genes around LINC02572 on UCSC Golden Path with GeneCards custom track
LINC02572 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02572 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02572 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02572 Gene

Proteins for LINC02572 Gene

Post-translational modifications for LINC02572 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02572 Gene

Domains & Families for LINC02572 Gene

Gene Families for LINC02572 Gene

genes like me logo Genes that share domains with LINC02572: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02572 Gene

Function for LINC02572 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02572 Gene

Localization for LINC02572 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02572 Gene

Pathways & Interactions for LINC02572 Gene

PathCards logo

SuperPathways for LINC02572 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02572 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02572 Gene

Drugs & Compounds for LINC02572 Gene

No Compound Related Data Available

Transcripts for LINC02572 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02572 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00003DC185_9606 lncRNA 565 3

Ensembl: ENST00000450531 (view in UCSC) ,

LNCipedia: LINC02572:14,

NONCODE: NONHSAT074247.2,

URS0000BDC0A3_9606 lncRNA 1609 2

Ensembl: ENST00000641154 (view in UCSC) ,

LNCipedia: LINC02572:8,

URS0000EF645A_9606 lncRNA 1764 1

Ensembl: ENST00000654914 (view in UCSC) ,

URS0000EF3E88_9606 lncRNA 1743 1

Ensembl: ENST00000669319 (view in UCSC) ,

URS0000BC441C_9606 lncRNA 1445 1

RefSeq: NR_149127,

LINC02572 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02572 Gene

No ASD Table

Relevant External Links for LINC02572 Gene

GeneLoc Exon Structure for
LINC02572

No data available for mRNA/cDNA for LINC02572 Gene

Expression for LINC02572 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02572 Gene

Orthologs for LINC02572 Gene

Evolution for LINC02572 Gene

ENSEMBL:
Gene Tree for LINC02572 (if available)
TreeFam:
Gene Tree for LINC02572 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02572

No data available for Orthologs for LINC02572 Gene

Paralogs for LINC02572 Gene

No data available for Paralogs for LINC02572 Gene

Variants for LINC02572 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02572 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02572 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02572
Leiden Open Variation Database (LOVD)
LINC02572

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02572 Gene

Disorders for LINC02572 Gene

Additional Disease Information for LINC02572

No disorders were found for LINC02572 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02572 Gene

Publications for LINC02572 Gene

  1. Microarray expression profiling of long non-coding RNAs in epithelial ovarian cancer. (PMID: 28781691) Ding Y … Wang SM (Oncology letters 2017) 2 3

Products for LINC02572 Gene

Sources for LINC02572 Gene