Aliases for LINC02567 Gene

Subcategory (RNA class) for LINC02567 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LINC02567 Gene

  • Long Intergenic Non-Protein Coding RNA 2567 2 3 5
  • LINC02567 2 5 165
  • ENST00000427806 2
  • HSALNG0004554 164

External Ids for LINC02567 Gene

Summaries for LINC02567 Gene

GeneCards Summary for LINC02567 Gene

LINC02567 (Long Intergenic Non-Protein Coding RNA 2567) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02567 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02567 Gene

Genomics for LINC02567 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02567 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J076759 Enhancer 0.8 Ensembl 0.4 +19.2 19161 0.6 PRDM10 ZNF629 ZNF692 ZIC2 ZSCAN4 PATZ1 ZNF331 ZNF600 ZNF37A ZNF561 RF00026-053 LINC02567 ST6GALNAC5 ST6GALNAC3
GH01J076765 Enhancer 0.5 FANTOM5 0.4 +14.0 14016 0.2 ZNF629 ZBTB20 ZFHX2 ZFP37 GATA2 ST6GALNAC5 LINC02567 RF00026-053 ST6GALNAC3
GH01J076763 Enhancer 0.3 Ensembl 0.4 +15.4 15366 0.2 ATF7 ATF2 RF00026-053 LINC02567 ST6GALNAC5 ST6GALNAC3
GH01J076781 Enhancer 0.2 Ensembl 0.7 -2.0 -2034 0.2 LINC02567 lnc-ST6GALNAC5-2 ST6GALNAC5 ST6GALNAC3
GH01J076826 Enhancer 0.3 Ensembl 0.3 -47.4 -47433 0.6 JUND ZNF316 RNU6-161P lnc-ST6GALNAC5-2 ST6GALNAC5 LINC02567 ST6GALNAC3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02567 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02567 Gene

Genomic Locations for LINC02567 Gene
chr1:76,758,123-76,779,267
(GRCh38/hg38)
Size:
21,145 bases
Orientation:
Minus strand
chr1:77,223,809-77,244,952
(GRCh37/hg19)
Size:
21,144 bases
Orientation:
Minus strand

Genomic View for LINC02567 Gene

Genes around LINC02567 on UCSC Golden Path with GeneCards custom track
LINC02567 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02567 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02567 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02567 Gene

Proteins for LINC02567 Gene

Post-translational modifications for LINC02567 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02567 Gene

Domains & Families for LINC02567 Gene

Gene Families for LINC02567 Gene

genes like me logo Genes that share domains with LINC02567: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02567 Gene

Function for LINC02567 Gene

Phenotypes From GWAS Catalog for LINC02567 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02567 Gene

Localization for LINC02567 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02567 Gene

Pathways & Interactions for LINC02567 Gene

PathCards logo

SuperPathways for LINC02567 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02567 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02567 Gene

Drugs & Compounds for LINC02567 Gene

No Compound Related Data Available

Transcripts for LINC02567 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02567 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002C3963_9606 lncRNA 448 4

HGNC: 53609,

RefSeq: NR_149059,

Ensembl: ENST00000427806 (view in UCSC) ,

LNCipedia: LINC02567:3,

URS0000EB8AF3_9606 lncRNA 451 1

LncBook: HSALNT0289146,

LINC02567 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02567 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02567 Gene

No ASD Table

Relevant External Links for LINC02567 Gene

GeneLoc Exon Structure for
LINC02567

Expression for LINC02567 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02567 Gene

Orthologs for LINC02567 Gene

Evolution for LINC02567 Gene

ENSEMBL:
Gene Tree for LINC02567 (if available)
TreeFam:
Gene Tree for LINC02567 (if available)

No data available for Orthologs for LINC02567 Gene

Paralogs for LINC02567 Gene

No data available for Paralogs for LINC02567 Gene

Variants for LINC02567 Gene

Additional dbSNP identifiers (rs#s) for LINC02567 Gene

Additional Variant Information for LINC02567 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02567

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02567 Gene

Disorders for LINC02567 Gene

Additional Disease Information for LINC02567

No disorders were found for LINC02567 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02567 Gene

Publications for LINC02567 Gene

  1. Genome-wide analyses of aggressiveness in attention-deficit hyperactivity disorder. (PMID: 27021288) Brevik EJ … Zayats T (American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics 2016) 2 3
  2. Generation and analysis of 280,000 human expressed sequence tags. (PMID: 8889549) Hillier LD … Marra M (Genome research 1996) 3

Products for LINC02567 Gene

Sources for LINC02567 Gene