Aliases for LINC02565 Gene

Subcategory (RNA class) for LINC02565 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02565 Gene

  • Long Intergenic Non-Protein Coding RNA 2565 2 3 5
  • LINC02565 2 5 165
  • NONHSAG023932.2 91
  • HSALNG0121751 164

External Ids for LINC02565 Gene

Summaries for LINC02565 Gene

GeneCards Summary for LINC02565 Gene

LINC02565 (Long Intergenic Non-Protein Coding RNA 2565) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02565 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02565 Gene

Genomics for LINC02565 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02565 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J057426 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.7 -3.2 -3174 20.2 RNF2 HNRNPL GATAD2A CTCF TEAD4 PRDM10 REST SOX13 KDM1A ZNF692 ONECUT2 ST8SIA3 LOC112267870 LINC02565 ENSG00000277837 FECH
GH18J057353 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas 0.2 +80.3 80280 2.6 TEAD4 REST TFE3 NFKBIZ KDM1A PRDM1 ZIC2 POLR2A ZNF501 EZH2 ST8SIA3 lnc-ONECUT2-1 LINC02565 ONECUT2
GH18J057273 Enhancer 0.6 ENCODE 0.1 +160.3 160262 0.6 GATAD2A FOXA1 CEBPA SOX13 FOXA2 TEAD1 HHEX FOXP1 GATA3 SMAD4 RF00026-488 piR-59769-300 ST8SIA3 BOD1L2 LINC02565
GH18J057389 Enhancer 0.2 ENCODE 0.3 +44.1 44097 0.2 piR-43104-028 piR-32214-312 ST8SIA3 LINC02565 ONECUT2
GH18J057209 Enhancer 0.7 ENCODE 0.1 +222.9 222853 2.2 JUND SP1 CEBPB FOS JUN ZBTB48 ZNF592 SMARCB1 FOSL1 EP300 BOD1L2 ST8SIA3 piR-51671-044 piR-32461-079 LINC02565
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02565 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02565 Gene

Genomic Locations for LINC02565 Gene
chr18:57,165,874-57,433,581
(GRCh38/hg38)
Size:
267,708 bases
Orientation:
Minus strand
chr18:54,836,846-54,838,425
(GRCh37/hg19)
Size:
1,580 bases
Orientation:
Minus strand

Genomic View for LINC02565 Gene

Genes around LINC02565 on UCSC Golden Path with GeneCards custom track
LINC02565 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02565 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02565 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02565 Gene

Proteins for LINC02565 Gene

Post-translational modifications for LINC02565 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02565 Gene

Domains & Families for LINC02565 Gene

Gene Families for LINC02565 Gene

genes like me logo Genes that share domains with LINC02565: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02565 Gene

Function for LINC02565 Gene

Phenotypes From GWAS Catalog for LINC02565 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02565 Gene

Localization for LINC02565 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02565 Gene

Pathways & Interactions for LINC02565 Gene

PathCards logo

SuperPathways for LINC02565 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02565 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02565 Gene

Drugs & Compounds for LINC02565 Gene

No Compound Related Data Available

Transcripts for LINC02565 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02565 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000587BBE_9606 lncRNA 478 5

HGNC: 53605,

RefSeq: NR_149129,

Ensembl: ENST00000592678 (view in UCSC) ,

LNCipedia: LINC02565:13,

NONCODE: NONHSAT059448.2,

URS0000D5AEA2_9606 lncRNA 5015 2

LncBook: HSALNT0251749,

LNCipedia: LINC02565:10,

URS0000D5AC7B_9606 lncRNA 701 2

LncBook: HSALNT0251750,

LNCipedia: LINC02565:11,

URS0000D5D268_9606 lncRNA 10262 1

LNCipedia: LINC02565:8,

URS0000D595C8_9606 lncRNA 1978 1

LNCipedia: LINC02565:12,

LINC02565 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02565 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02565 Gene

No ASD Table

Relevant External Links for LINC02565 Gene

GeneLoc Exon Structure for
LINC02565

Expression for LINC02565 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02565 Gene

Orthologs for LINC02565 Gene

Evolution for LINC02565 Gene

ENSEMBL:
Gene Tree for LINC02565 (if available)
TreeFam:
Gene Tree for LINC02565 (if available)

No data available for Orthologs for LINC02565 Gene

Paralogs for LINC02565 Gene

No data available for Paralogs for LINC02565 Gene

Variants for LINC02565 Gene

Additional dbSNP identifiers (rs#s) for LINC02565 Gene

Additional Variant Information for LINC02565 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02565

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02565 Gene

Disorders for LINC02565 Gene

Additional Disease Information for LINC02565

No disorders were found for LINC02565 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02565 Gene

Publications for LINC02565 Gene

No publications were found for LINC02565 Gene.

No data available for Mastermind for LINC02565 Gene

Products for LINC02565 Gene

Sources for LINC02565 Gene