Aliases for LINC02565 Gene

Data sources for LINC02565 Gene:

Subcategory (RNA class) for LINC02565 Gene

lncRNA

Aliases for LINC02565 Gene

External Ids for LINC02565 Gene

Previous GeneCards Identifiers for LINC02565 Gene

  • GC18M057171

Summaries for LINC02565 Gene

GeneCards Summary for LINC02565 Gene

LINC02565 (Long Intergenic Non-Protein Coding RNA 2565) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02565 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02565 Gene

Genomics for LINC02565 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02565 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J057426 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 -1.3 -1307 17.3 ZSCAN16 CHD2 TBP FEZF1 MBD2 CTCF ZEB1 ZIC2 ZNF610 THAP11 ONECUT2 LINC02565 ST8SIA3 HSALNG0121763 ENSG00000277837 LOC112267870
GH18J057353 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas 0.2 +80.7 80675 2.6 ZIC2 SIN3A REST SAP130 ZSCAN9 KMT2B GABPB1 RARA YY1 SP2 ST8SIA3 lnc-ONECUT2-1 HSALNG0121751-002 LINC02565 ONECUT2
GH18J057273 Enhancer 0.6 ENCODE 0.1 +160.7 160657 0.6 CEBPA FOXA2 SMAD4 RARA TEAD3 BCL6 FOXP1 SOX5 FOXA1 HHEX HSALNG0121757 piR-59769-300 ST8SIA3 BOD1L2 LINC02565
GH18J057209 Enhancer 0.6 ENCODE 0.1 +223.2 223248 2.2 CEBPB EP300 RAD21 RFX5 SMC3 JUND FOSL1 TCF7L2 ZBTB48 HNF4A BOD1L2 ST8SIA3 HSALNG0121754 piR-51671-044 LINC02565
GH18J057389 Enhancer 0.2 ENCODE 0.3 +44.5 44492 0.2 piR-43104-028 HSALNG0121751-002 piR-32214-312 ST8SIA3 LINC02565 ONECUT2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02565 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02565 Gene

Latest Assembly
chr18:57,158,964-57,433,976
(GRCh38/hg38)
Size:
275,013 bases
Orientation:
Minus strand

Previous Assembly
chr18:54,836,846-54,838,425
(GRCh37/hg19 by Entrez Gene)
Size:
1,580 bases
Orientation:
Minus strand

chr18:54,836,846-54,838,425
(GRCh37/hg19 by Ensembl)
Size:
1,580 bases
Orientation:
Minus strand

Genomic View for LINC02565 Gene

Genes around LINC02565 on UCSC Golden Path with GeneCards custom track
LINC02565 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02565 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02565 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02565 Gene

Proteins for LINC02565 Gene

Post-translational modifications for LINC02565 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02565 Gene

Domains & Families for LINC02565 Gene

Gene Families for LINC02565 Gene

genes like me logo Genes that share domains with LINC02565: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02565 Gene

Function for LINC02565 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02565 Gene

Localization for LINC02565 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02565 Gene

Pathways & Interactions for LINC02565 Gene

PathCards logo

SuperPathways for LINC02565 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02565 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02565 Gene

Drugs & Compounds for LINC02565 Gene

No Compound Related Data Available

Transcripts for LINC02565 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02565 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000587BBE_9606 lncRNA 480 4

RefSeq: NR_149129,

Ensembl: ENST00000592678 (view in UCSC) ,

LNCipedia: LINC02565:13,

NONCODE: NONHSAT059448.2,

URS0000D5AEA2_9606 lncRNA 5017 2

LncBook: HSALNT0251749,

LNCipedia: LINC02565:10,

URS0000D5AC7B_9606 lncRNA 701 2

LncBook: HSALNT0251750,

LNCipedia: LINC02565:11,

URS0001BE1842_9606 lncRNA 10424 1

LncBook: HSALNT0251726,

URS0000D5D268_9606 lncRNA 10267 1

LNCipedia: LINC02565:8,

LINC02565 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02565 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02565 Gene

No ASD Table

Relevant External Links for LINC02565 Gene

GeneLoc Exon Structure for
LINC02565

Expression for LINC02565 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02565 Gene

Orthologs for LINC02565 Gene

Evolution for LINC02565 Gene

ENSEMBL:
Gene Tree for LINC02565 (if available)
TreeFam:
Gene Tree for LINC02565 (if available)

No data available for Orthologs for LINC02565 Gene

Paralogs for LINC02565 Gene

No data available for Paralogs for LINC02565 Gene

Variants for LINC02565 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02565 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02565 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02565

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02565 Gene

Disorders for LINC02565 Gene

Additional Disease Information for LINC02565

No disorders were found for LINC02565 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02565 Gene

Publications for LINC02565 Gene

No publications were found for LINC02565 Gene.

No data available for Mastermind for LINC02565 Gene

Products for LINC02565 Gene

Sources for LINC02565 Gene