Aliases for LINC02563 Gene

Subcategory (RNA class) for LINC02563 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC02563 Gene

  • Long Intergenic Non-Protein Coding RNA 2563 2 3 5
  • Cervical Cancer-Associated Transcript 40 2 3
  • LINC02563 2 170
  • CTD-2535L24.3 3
  • HSALNG0118209 169
  • NONHSAG022534 94
  • CRAT40 3

External Ids for LINC02563 Gene

Summaries for LINC02563 Gene

GeneCards Summary for LINC02563 Gene

LINC02563 (Long Intergenic Non-Protein Coding RNA 2563) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02563 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02563 Gene

Genomics for LINC02563 Gene

GeneHancer (GH) Regulatory Elements for LINC02563 Gene

Promoters and enhancers for LINC02563 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J065455 Enhancer 0.7 Ensembl ENCODE 750.6 -0.4 -424 2 CTCF RBPJ RAD21 CEBPG ZIC2 CEBPA RXRA HNF4A XRCC5 LINC02563 lnc-AXIN2-4
GH17J065461 Enhancer 0.9 Ensembl ENCODE CraniofacialAtlas 0.6 +2.7 2721 2.7 SREBF1 HLF MAFK CEBPG ZBTB33 CTBP1 CHD1 DPF2 CUX1 CTCF LINC02563 HSALNG0118210
GH17J065453 Enhancer 0.6 Ensembl ENCODE 0.6 -3.4 -3424 0.4 FOXA2 ETS1 POLR2A lnc-AXIN2-4 LINC02563
GH17J065463 Enhancer 0.6 Ensembl ENCODE 0.4 +6.4 6376 1.6 SP1 RXRA JUND NR2F2 LINC02563 HSALNG0118210
GH17J065467 Enhancer 0.3 ENCODE 0.4 +10.1 10053 0.2 NR2F6 AXIN2 HSALNG0118210 LINC02563
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02563 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02563 Gene

Genomic Locations for LINC02563 Gene
chr17:65,457,225-65,466,768
(GRCh38/hg38)
Size:
9,544 bases
Orientation:
Plus strand
chr17:63,453,659-63,454,526
(GRCh37/hg19)
Size:
868 bases
Orientation:
Plus strand

Genomic View for LINC02563 Gene

Genes around LINC02563 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02563 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02563 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02563 Gene

Proteins for LINC02563 Gene

Post-translational modifications for LINC02563 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02563 Gene

Domains & Families for LINC02563 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02563 Gene

Function for LINC02563 Gene

Phenotypes From GWAS Catalog for LINC02563 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02563 Gene

Localization for LINC02563 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02563 Gene

Pathways & Interactions for LINC02563 Gene

PathCards logo

SuperPathways for LINC02563 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02563 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02563 Gene

Drugs & Compounds for LINC02563 Gene

No Compound Related Data Available

Transcripts for LINC02563 Gene

mRNA/cDNA for LINC02563 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(1) LNCipedia transcripts :
(2) LncBook transcripts :
(1) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02563 Gene

No ASD Table

Relevant External Links for LINC02563 Gene

GeneLoc Exon Structure for
LINC02563
ECgene alternative splicing isoforms for
LINC02563

Expression for LINC02563 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02563 Gene

Orthologs for LINC02563 Gene

Evolution for LINC02563 Gene

ENSEMBL:
Gene Tree for LINC02563 (if available)
TreeFam:
Gene Tree for LINC02563 (if available)

No data available for Orthologs for LINC02563 Gene

Paralogs for LINC02563 Gene

No data available for Paralogs for LINC02563 Gene

Variants for LINC02563 Gene

Sequence variations from dbSNP and Humsavar for LINC02563 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000923452 -- 65,456,974(+) C/T upstream_transcript_variant
rs1000981526 -- 65,458,808(+) G/T downstream_transcript_variant
rs1001014608 -- 65,457,269(+) G/A upstream_transcript_variant
rs1001924968 -- 65,458,237(+) C/A intron_variant
rs1003762410 -- 65,456,627(+) T/C upstream_transcript_variant

Additional Variant Information for LINC02563 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02563

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02563 Gene

Disorders for LINC02563 Gene

Additional Disease Information for LINC02563

No disorders were found for LINC02563 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02563 Gene

Publications for LINC02563 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 56

No data available for External Links for LINC02563 Gene

Products for LINC02563 Gene

Sources for LINC02563 Gene