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Aliases for LINC02563 Gene

Subcategory (RNA class) for LINC02563 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC02563 Gene

  • Long Intergenic Non-Protein Coding RNA 2563 2 3 5
  • Cervical Cancer-Associated Transcript 40 2 3
  • CTD-2535L24.3 3
  • CRAT40 3

External Ids for LINC02563 Gene

Summaries for LINC02563 Gene

GeneCards Summary for LINC02563 Gene

LINC02563 (Long Intergenic Non-Protein Coding RNA 2563) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02563 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02563 Gene

Genomics for LINC02563 Gene

GeneHancer (GH) Regulatory Elements for LINC02563 Gene

Promoters and enhancers for LINC02563 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I065455 Enhancer 0.8 Ensembl ENCODE 550.8 -1.3 -1283 0.7 CTCF RXRA CEBPG ZIC2 RAD21 CEBPA HNF4A NR2F6 LINC02563 GC17M065237
GH17I065460 Enhancer 0.6 ENCODE 0.8 +3.2 3157 0.2 CHD1 DPF2 CEBPG SREBF1 GATA3 CTBP1 RCOR1 CUX1 ZBTB33 MAFK LINC02563 AXIN2
GH17I065454 Enhancer 0.4 ENCODE 0.8 -4.2 -4185 0.3 FOXA2 POLR2A LINC02563 GC17M065237
GH17I065494 Enhancer 0.9 Ensembl ENCODE 0.3 +37.8 37767 1.4 CTCF SCRT1 KLF1 MAZ BACH1 ZIC2 ETS1 FOXA1 SP1 ZFHX2 LINC02563 AXIN2
GH17I065553 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 0.1 +100.5 100539 10.1 HDGF PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZBTB7B AXIN2 ENSG00000266076 LINC02563
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC02563 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02563 Gene

Genomic Locations for LINC02563 Gene
chr17:65,457,541-65,458,408
(GRCh38/hg38)
Size:
868 bases
Orientation:
Plus strand
chr17:63,453,659-63,454,526
(GRCh37/hg19)

Genomic View for LINC02563 Gene

Genes around LINC02563 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02563 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02563 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02563 Gene

Proteins for LINC02563 Gene

Post-translational modifications for LINC02563 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02563 Gene

Domains & Families for LINC02563 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02563 Gene

Function for LINC02563 Gene

Phenotypes From GWAS Catalog for LINC02563 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02563 Gene

Localization for LINC02563 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02563 Gene

Pathways & Interactions for LINC02563 Gene

SuperPathways for LINC02563 Gene

No Data Available

Interacting Proteins for LINC02563 Gene

Gene Ontology (GO) - Biological Process for LINC02563 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02563 Gene

Drugs & Compounds for LINC02563 Gene

No Compound Related Data Available

Transcripts for LINC02563 Gene

mRNA/cDNA for LINC02563 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02563 Gene

No ASD Table

Relevant External Links for LINC02563 Gene

GeneLoc Exon Structure for
LINC02563
ECgene alternative splicing isoforms for
LINC02563

Expression for LINC02563 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02563 Gene

Orthologs for LINC02563 Gene

Evolution for LINC02563 Gene

ENSEMBL:
Gene Tree for LINC02563 (if available)
TreeFam:
Gene Tree for LINC02563 (if available)

No data available for Orthologs for LINC02563 Gene

Paralogs for LINC02563 Gene

No data available for Paralogs for LINC02563 Gene

Variants for LINC02563 Gene

Sequence variations from dbSNP and Humsavar for LINC02563 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000923452 -- 65,456,974(+) C/T upstream_transcript_variant
rs1000981526 -- 65,458,808(+) G/T downstream_transcript_variant
rs1001014608 -- 65,457,269(+) G/A upstream_transcript_variant
rs1001924968 -- 65,458,237(+) C/A intron_variant
rs1003762410 -- 65,456,627(+) T/C upstream_transcript_variant

Additional Variant Information for LINC02563 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02563

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02563 Gene

Disorders for LINC02563 Gene

No disorders were found for LINC02563 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02563 Gene

Publications for LINC02563 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 58

Products for LINC02563 Gene

Sources for LINC02563 Gene

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