Aliases for LINC02563 Gene

Subcategory (RNA class) for LINC02563 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC02563 Gene

  • Long Intergenic Non-Protein Coding RNA 2563 2 3 5
  • Cervical Cancer-Associated Transcript 40 2 3
  • LINC02563 2 168
  • CTD-2535L24.3 3
  • HSALNG0118209 167
  • NONHSAG022534 92
  • CRAT40 3

External Ids for LINC02563 Gene

Summaries for LINC02563 Gene

GeneCards Summary for LINC02563 Gene

LINC02563 (Long Intergenic Non-Protein Coding RNA 2563) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02563 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02563 Gene

Genomics for LINC02563 Gene

GeneHancer (GH) Regulatory Elements for LINC02563 Gene

Promoters and enhancers for LINC02563 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J065455 Enhancer 0.8 Ensembl ENCODE 500.7 -0.4 -424 2 CTCF ZIC2 RAD21 ZNF589 ZNF654 CEBPG ZNF584 RXRA HNF4A ZNF175 LINC02563 lnc-AXIN2-4
GH17J065461 Enhancer 0.9 Ensembl ENCODE CraniofacialAtlas 0.7 +2.7 2721 2.7 CUX1 CHD1 CTBP1 MAFF MAFK CTCF DPF2 RCOR1 HLF GATA3 LINC02563 HSALNG0118210
GH17J065453 Enhancer 0.7 Ensembl ENCODE 0.7 -3.4 -3424 0.4 TEAD4 POLR2A FOXA2 ETS1 GTF2F1 TBP EGR1 TAF7 FOS lnc-AXIN2-4 LINC02563
GH17J065463 Enhancer 0.7 Ensembl ENCODE 0.4 +6.4 6376 1.6 NR2F2 FOS NR3C1 JUND STAT3 RXRA SP1 HSALNG0118210 LINC02563
GH17J065467 Enhancer 0.3 ENCODE 0.4 +10.1 10053 0.2 NR2F6 AXIN2 HSALNG0118210 LINC02563
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02563 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02563 Gene

Genomic Locations for LINC02563 Gene
chr17:65,457,225-65,466,768
(GRCh38/hg38)
Size:
9,544 bases
Orientation:
Plus strand
chr17:63,453,659-63,454,526
(GRCh37/hg19)
Size:
868 bases
Orientation:
Plus strand

Genomic View for LINC02563 Gene

Genes around LINC02563 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02563 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02563 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02563 Gene

Proteins for LINC02563 Gene

Post-translational modifications for LINC02563 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02563 Gene

Domains & Families for LINC02563 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02563 Gene

Function for LINC02563 Gene

Phenotypes From GWAS Catalog for LINC02563 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02563 Gene

Localization for LINC02563 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02563 Gene

Pathways & Interactions for LINC02563 Gene

PathCards logo

SuperPathways for LINC02563 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02563 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02563 Gene

Drugs & Compounds for LINC02563 Gene

No Compound Related Data Available

Transcripts for LINC02563 Gene

mRNA/cDNA for LINC02563 Gene

2 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 NONCODE transcripts :
2 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02563 Gene

No ASD Table

Relevant External Links for LINC02563 Gene

GeneLoc Exon Structure for
LINC02563

Expression for LINC02563 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02563 Gene

Orthologs for LINC02563 Gene

Evolution for LINC02563 Gene

ENSEMBL:
Gene Tree for LINC02563 (if available)
TreeFam:
Gene Tree for LINC02563 (if available)

No data available for Orthologs for LINC02563 Gene

Paralogs for LINC02563 Gene

No data available for Paralogs for LINC02563 Gene

Variants for LINC02563 Gene

Additional dbSNP identifiers (rs#s) for LINC02563 Gene

Additional Variant Information for LINC02563 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02563

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02563 Gene

Disorders for LINC02563 Gene

Additional Disease Information for LINC02563

No disorders were found for LINC02563 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02563 Gene

Publications for LINC02563 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 54

No data available for Mastermind for LINC02563 Gene

Products for LINC02563 Gene

Sources for LINC02563 Gene