Aliases for LINC02561 Gene

Data sources for LINC02561 Gene:

RNA type for LINC02561 Gene

lncRNA

Aliases for LINC02561 Gene

External Ids for LINC02561 Gene

Previous GeneCards Identifiers for LINC02561 Gene

  • GC10M005267
  • GC10M005268

Summaries for LINC02561 Gene

GeneCards Summary for LINC02561 Gene

LINC02561 (Long Intergenic Non-Protein Coding RNA 2561) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02561 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02561 Gene

Genomics for LINC02561 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02561 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J005289 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 267.8 -1.9 -1949 8.8 NCOR1 ZNF592 CEBPA REST CTCF CEBPB BHLHE40 HOMEZ EP300 THAP11 LINC02561 lnc-UCN3-3 TUBAL3 UCN3 ENSG00000239142 AKR1C3 AKR1E2 lnc-TUBAL3-1 AKR1C4
GH10J005285 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 10.3 +7.3 7270 1.7 NCOR1 SSRP1 ZNF592 CHD4 YY1 CTCF HOMEZ ZNF217 NONO TAF9B LINC02561 TUBAL3 AKR1C7P lnc-TUBAL3-3 UCN3 AKR1C4
GH10J005234 Enhancer 1 Ensembl ENCODE 12.1 +57.3 57296 2.4 SSRP1 CEBPA YY1 CEBPB HOMEZ THAP11 FOXA2 MAFF SMAD4 RXRA ENSG00000231039 piR-59297-034 LINC02561 UCN3 TUBAL3 AKR1C8P lnc-AKR1C4-3 AKR1C4
GH10J005284 Enhancer 0.8 ENCODE 11.1 +8.2 8234 0.2 ZNF654 SSRP1 ZNF592 ATF3 CHD4 YY1 CTCF REST HOMEZ ZNF217 LINC02561 AKR1C7P lnc-TUBAL3-3 UCN3 AKR1C4
GH10J005272 Enhancer 0.8 FANTOM5 Ensembl 10.4 +17.9 17896 3.6 ZNF592 MAFF ZNF316 NFE2 MAFK NFE2L2 MAFG BACH1 EMSY AKR1C4 ENSG00000239142 AKR1C3 UCN3 LINC02561 TUBAL3 AKR1C7P lnc-TUBAL3-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02561 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02561 Gene

Latest Assembly
chr10:5,263,742-5,291,897
(GRCh38/hg38)
Size:
28,156 bases
Orientation:
Minus strand

Previous Assembly
chr10:5,307,952-5,313,199
(GRCh37/hg19 by Entrez Gene)
Size:
5,248 bases
Orientation:
Minus strand

chr10:5,307,996-5,313,199
(GRCh37/hg19 by Ensembl)
Size:
5,204 bases
Orientation:
Minus strand

Genomic View for LINC02561 Gene

Genes around LINC02561 on UCSC Golden Path with GeneCards custom track
LINC02561 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02561 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02561 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02561 Gene

Proteins for LINC02561 Gene

Post-translational modifications for LINC02561 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02561 Gene

Domains & Families for LINC02561 Gene

Gene Families for LINC02561 Gene

genes like me logo Genes that share domains with LINC02561: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02561 Gene

Function for LINC02561 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02561 Gene

Localization for LINC02561 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02561 Gene

Pathways & Interactions for LINC02561 Gene

PathCards logo

SuperPathways for LINC02561 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02561 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02561 Gene

Drugs & Compounds for LINC02561 Gene

No Compound Related Data Available

Transcripts for LINC02561 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02561 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000472E1F_9606 lncRNA 694 3

Ensembl: ENST00000449457 (view in UCSC) ,

LNCipedia: LINC02561:21,

NONCODE: NONHSAT011147.2,

URS0000BC45F0_9606 lncRNA 736 1

RefSeq: NR_149060,

URS00009C2C4B_9606 lncRNA 692 2

LncBook: HSALNT0158160,

NONCODE: NONHSAT156570.1,

URS0000D5BE41_9606 lncRNA 7619 1

LNCipedia: LINC02561:12,

URS0000D5AFD7_9606 lncRNA 6806 1

LNCipedia: LINC02561:16,

LINC02561 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02561 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02561 Gene

No ASD Table

Relevant External Links for LINC02561 Gene

GeneLoc Exon Structure for
LINC02561

Expression for LINC02561 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02561 Gene

Orthologs for LINC02561 Gene

Evolution for LINC02561 Gene

ENSEMBL:
Gene Tree for LINC02561 (if available)
TreeFam:
Gene Tree for LINC02561 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02561

No data available for Orthologs for LINC02561 Gene

Paralogs for LINC02561 Gene

No data available for Paralogs for LINC02561 Gene

Variants for LINC02561 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02561 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02561 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02561
Leiden Open Variation Database (LOVD)
LINC02561

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02561 Gene

Disorders for LINC02561 Gene

Additional Disease Information for LINC02561

No disorders were found for LINC02561 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02561 Gene

Publications for LINC02561 Gene

  1. Bronchial Epithelial Cells from Cystic Fibrosis Patients Express a Specific Long Non-coding RNA Signature upon Pseudomonas aeruginosa Infection. (PMID: 28611953) Balloy V … Scaria V (Frontiers in cellular and infection microbiology 2017) 2 3

Products for LINC02561 Gene

Sources for LINC02561 Gene