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Aliases for LINC02557 Gene

Subcategory (RNA class) for LINC02557 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02557 Gene

  • Long Intergenic Non-Protein Coding RNA 2557 2 3 5

External Ids for LINC02557 Gene

Summaries for LINC02557 Gene

GeneCards Summary for LINC02557 Gene

LINC02557 (Long Intergenic Non-Protein Coding RNA 2557) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02557 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02557 Gene

Genomics for LINC02557 Gene

GeneHancer (GH) Regulatory Elements for LINC02557 Gene

Promoters and enhancers for LINC02557 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J023511 Enhancer 0.7 dbSUPER 614.1 +0.2 181 4.7 MLLT1 ZNF341 SCRT2 ZNF23 ZBTB17 SCRT1 POLR2A ZNF623 PTBP1 NFIC LINC02557 RGL4 GUSBP11 ZDHHC8P1 ENSG00000227755 DDT LINC01659 FAM230I
GH22J023518 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 13.6 -8.0 -7964 6.4 ZFX ELF3 MNT ZNF148 NKRF POLR2A MLLT1 RERE TFE3 HNF1A ENSG00000272578 LINC02557 CABIN1 SMARCB1 MMP11 RGL4 GGTLC4P GUSBP11 ENSG00000227755 DDT
GH22J023509 Enhancer 0.7 Ensembl ENCODE 13.8 +3.7 3696 0.8 ZNF384 USF1 ZFHX2 IKZF1 L3MBTL2 LINC02557 RGL4 GUSBP11 FAM230I
GH22J023528 Enhancer 0.2 Ensembl 7.6 -14.8 -14799 0.8 LINC02557 PCAT14
GH22J023532 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 0.3 -22.6 -22573 8.3 HDGF CC2D1A ZFX ELF3 CTCF CBFA2T2 ZNF148 MLLT1 RERE GTF2F1 PCAT14 ZNF70 SPECC1L IGLL1 ENSG00000232545 POM121L9P MIF MMP11 LINC01659 VPREB3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02557 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02557 Gene

Genomic Locations for LINC02557 Gene
chr22:23,510,514-23,513,602
(GRCh38/hg38)
Size:
3,089 bases
Orientation:
Minus strand
chr22:23,854,681-23,855,789
(GRCh37/hg19)
Size:
1,109 bases
Orientation:
Minus strand

Genomic View for LINC02557 Gene

Genes around LINC02557 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02557 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02557 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02557 Gene

Proteins for LINC02557 Gene

Post-translational modifications for LINC02557 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02557 Gene

Domains & Families for LINC02557 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02557 Gene

Function for LINC02557 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02557 Gene

Localization for LINC02557 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02557 Gene

Pathways & Interactions for LINC02557 Gene

PathCards logo

SuperPathways for LINC02557 Gene

No Data Available

Interacting Proteins for LINC02557 Gene

Gene Ontology (GO) - Biological Process for LINC02557 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02557 Gene

Drugs & Compounds for LINC02557 Gene

No Compound Related Data Available

Transcripts for LINC02557 Gene

mRNA/cDNA for LINC02557 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02557 Gene

No ASD Table

Relevant External Links for LINC02557 Gene

GeneLoc Exon Structure for
LINC02557
ECgene alternative splicing isoforms for
LINC02557

Expression for LINC02557 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02557 Gene

Orthologs for LINC02557 Gene

Evolution for LINC02557 Gene

ENSEMBL:
Gene Tree for LINC02557 (if available)
TreeFam:
Gene Tree for LINC02557 (if available)

No data available for Orthologs for LINC02557 Gene

Paralogs for LINC02557 Gene

No data available for Paralogs for LINC02557 Gene

Variants for LINC02557 Gene

Sequence variations from dbSNP and Humsavar for LINC02557 Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000975629 -- 23,513,685(-) G/A/T upstream_transcript_variant
rs1001689558 -- 23,515,295(-) T/C upstream_transcript_variant
rs1001953943 -- 23,510,960(-) C/T intron_variant
rs1003898776 -- 23,514,269(-) AGTCTTGGAG/AG upstream_transcript_variant
rs1004564642 -- 23,510,552(-) C/T non_coding_transcript_variant

Additional Variant Information for LINC02557 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02557

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02557 Gene

Disorders for LINC02557 Gene

No disorders were found for LINC02557 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02557 Gene

Publications for LINC02557 Gene

No publications were found for LINC02557 Gene.

No data available for External Links for LINC02557 Gene

Products for LINC02557 Gene

Sources for LINC02557 Gene

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