Aliases for LINC02551 Gene

Data sources for LINC02551 Gene:

Subcategory (RNA class) for LINC02551 Gene

lncRNA

Aliases for LINC02551 Gene

External Ids for LINC02551 Gene

Summaries for LINC02551 Gene

GeneCards Summary for LINC02551 Gene

LINC02551 (Long Intergenic Non-Protein Coding RNA 2551) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC02551 include Short Syndrome and Astigmatism.

Additional gene information for LINC02551 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02551 Gene

Genomics for LINC02551 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02551 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02551 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02551 Gene

Latest Assembly
chr11:130,844,141-130,865,561
(GRCh38/hg38)
Size:
21,421 bases
Orientation:
Minus strand

Previous Assembly
chr11:130,714,088-130,732,005
(GRCh37/hg19 by Entrez Gene)
Size:
17,918 bases
Orientation:
Minus strand

chr11:130,714,086-130,735,456
(GRCh37/hg19 by Ensembl)
Size:
21,371 bases
Orientation:
Minus strand

Genomic View for LINC02551 Gene

Genes around LINC02551 on UCSC Golden Path with GeneCards custom track
LINC02551 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02551 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02551 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02551 Gene

Proteins for LINC02551 Gene

Post-translational modifications for LINC02551 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02551 Gene

Domains & Families for LINC02551 Gene

Gene Families for LINC02551 Gene

genes like me logo Genes that share domains with LINC02551: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02551 Gene

Function for LINC02551 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02551 Gene

Localization for LINC02551 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02551 Gene

Pathways & Interactions for LINC02551 Gene

PathCards logo

SuperPathways for LINC02551 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02551 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02551 Gene

Drugs & Compounds for LINC02551 Gene

No Compound Related Data Available

Transcripts for LINC02551 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02551 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004CABC0_9606 lncRNA 2203 4

Ensembl: ENST00000533812 (view in UCSC) ,

LncBook: HSALNT0183531,

LNCipedia: LINC02551:13,

NONCODE: NONHSAT025146.2,

URS000009484F_9606 lncRNA 585 3

Ensembl: ENST00000533434 (view in UCSC) ,

LNCipedia: LINC02551:15,

NONCODE: NONHSAT025147.2,

URS00007E4D6D_9606 lncRNA 1453 1

RefSeq: NR_125383,

URS00008C030C_9606 lncRNA 6051 3

LncBook: HSALNT0183539,

LNCipedia: LINC02551:9,

NONCODE: NONHSAT025148.2,

URS0001BF3F81_9606 lncRNA 6047 1

LncBook: HSALNT0183539,

LINC02551 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02551 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02551 Gene

No ASD Table

Relevant External Links for LINC02551 Gene

GeneLoc Exon Structure for
LINC02551

Expression for LINC02551 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02551

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02551 Gene

Orthologs for LINC02551 Gene

Evolution for LINC02551 Gene

ENSEMBL:
Gene Tree for LINC02551 (if available)
TreeFam:
Gene Tree for LINC02551 (if available)

No data available for Orthologs for LINC02551 Gene

Paralogs for LINC02551 Gene

No data available for Paralogs for LINC02551 Gene

Variants for LINC02551 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02551 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC02551 Gene

Variant ID Type Subtype PubMed ID
dgv1296n100 CNV gain 25217958
esv3579972 CNV loss 25503493
nsv1035733 CNV gain 25217958
nsv551 CNV deletion 18451855
nsv556572 CNV gain 21841781
nsv556574 CNV gain 21841781

Additional Variant Information for LINC02551 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02551

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02551 Gene

Disorders for LINC02551 Gene

MalaCards: The human disease database

(2) MalaCards diseases for LINC02551 Gene - From: COP and GCD

Disorder Aliases PubMed IDs
short syndrome
  • short stature, hyperextensibility, hernia, ocular depression, rieger anomaly, and teething delay
astigmatism
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC02551

genes like me logo Genes that share disorders with LINC02551: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC02551 Gene

Publications for LINC02551 Gene

  1. Bronchial Epithelial Cells from Cystic Fibrosis Patients Express a Specific Long Non-coding RNA Signature upon Pseudomonas aeruginosa Infection. (PMID: 28611953) Balloy V … Scaria V (Frontiers in cellular and infection microbiology 2017) 2 3
  2. Genome-wide association study for refractive astigmatism reveals genetic co-determination with spherical equivalent refractive error: the CREAM consortium. (PMID: 25367360) Li Q … CREAM Consortium (Human genetics 2015) 3
  3. Biological insights from 108 schizophrenia-associated genetic loci. (PMID: 25056061) Schizophrenia Working Group of the Psychiatric Genomics Consortium (Nature 2014) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  5. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PMID: 15342556) Suzuki Y … Sugano S (Genome research 2004) 3

Products for LINC02551 Gene

Sources for LINC02551 Gene