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Aliases for LINC02551 Gene
Data sources for LINC02551 Gene:
Subcategory (RNA class) for LINC02551 Gene
lncRNA
Aliases for LINC02551 Gene
- Long Intergenic Non-Protein Coding RNA 2551 (HGNC, NCBI Entrez Gene, Ensembl)
- RP11-890B15.2 (HGNC, NCBI Entrez Gene)
- LINC02551 (Ensembl, LNCipedia)
- NONHSAG010061.2 (NONCODE)
- HSALNG0088252 (LncBook)
External Ids for LINC02551 Gene
- HGNC: 53586
- NCBI Entrez Gene: 100507431
- Ensembl: ENSG00000254842
Summaries for LINC02551 Gene
GeneCards Summary for LINC02551 Gene
LINC02551 (Long Intergenic Non-Protein Coding RNA 2551) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC02551 include Short Syndrome and Astigmatism.
Additional gene information for LINC02551 Gene
- HGNC (53586)
- NCBI Entrez Gene (100507431)
- Ensembl (ENSG00000254842)
- Open Targets Platform(ENSG00000254842)
- Monarch Initiative
- Search for LINC02551 at DataMed
- Search for LINC02551 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02551 Gene
Genomics for LINC02551 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC02551 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC02551 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC02551 Gene
Latest Assembly
- chr11:130,844,141-130,865,561
- (GRCh38/hg38)
- Size:
- 21,421 bases
- Orientation:
- Minus strand
Previous Assembly
- chr11:130,714,088-130,732,005
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 17,918 bases
- Orientation:
- Minus strand
- chr11:130,714,086-130,735,456
- (GRCh37/hg19 by Ensembl)
- Size:
- 21,371 bases
- Orientation:
- Minus strand
Genomic View for LINC02551 Gene
Genes around LINC02551 on UCSC Golden Path with GeneCards custom track
LINC02551 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 11q24.3 by HGNC
- 11q24.3 by Entrez Gene
- 11q24.3 by Ensembl
LINC02551 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC02551 Gene
Proteins for LINC02551 Gene
Post-translational modifications for LINC02551 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LINC02551 Gene
Domains & Families for LINC02551 Gene
Gene Families for LINC02551 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02551 Gene
Function for LINC02551 Gene
Phenotypes From GWAS Catalog for LINC02551 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02551 Gene
Localization for LINC02551 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02551 Gene
Transcripts for LINC02551 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02551 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00004CABC0_9606 | lncRNA | 2203 | 4 |
Ensembl: ENST00000533812 (view in UCSC) , LncBook: HSALNT0183531, LNCipedia: LINC02551:13, NONCODE: NONHSAT025146.2, |
| URS000009484F_9606 | lncRNA | 585 | 3 |
Ensembl: ENST00000533434 (view in UCSC) , LNCipedia: LINC02551:15, NONCODE: NONHSAT025147.2, |
| URS00007E4D6D_9606 | lncRNA | 1453 | 1 |
RefSeq: NR_125383, |
| URS00008C030C_9606 | lncRNA | 6051 | 3 |
LncBook: HSALNT0183539, LNCipedia: LINC02551:9, NONCODE: NONHSAT025148.2, |
| URS0001BF3F81_9606 | lncRNA | 6047 | 1 |
LncBook: HSALNT0183539, |
LINC02551 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC02551 Gene
- 2 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LINC02551 Gene
- GeneLoc Exon Structure for
- LINC02551
Expression for LINC02551 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02551
No Expression Related Data Available
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02551 Gene
Orthologs for LINC02551 Gene
No data available for Orthologs for LINC02551 Gene
Paralogs for LINC02551 Gene
No data available for Paralogs for LINC02551 Gene
Variants for LINC02551 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv1296n100 | CNV | gain | 25217958 |
| esv3579972 | CNV | loss | 25503493 |
| nsv1035733 | CNV | gain | 25217958 |
| nsv551 | CNV | deletion | 18451855 |
| nsv556572 | CNV | gain | 21841781 |
| nsv556574 | CNV | gain | 21841781 |
Additional Variant Information for LINC02551 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC02551
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02551 Gene
Disorders for LINC02551 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| short syndrome |
|
|
| astigmatism |
|
|
Search LINC02551 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for LINC02551
- Atlas
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
- Open Targets Platform
- Open Targets Platform
No data available for UniProtKB/Swiss-Prot and Genatlas for LINC02551 Gene
Publications for LINC02551 Gene
- Bronchial Epithelial Cells from Cystic Fibrosis Patients Express a Specific Long Non-coding RNA Signature upon Pseudomonas aeruginosa Infection. (PMID: 28611953) Balloy V … Scaria V (Frontiers in cellular and infection microbiology 2017) 2 3
- Genome-wide association study for refractive astigmatism reveals genetic co-determination with spherical equivalent refractive error: the CREAM consortium. (PMID: 25367360) Li Q … CREAM Consortium (Human genetics 2015) 3
- Biological insights from 108 schizophrenia-associated genetic loci. (PMID: 25056061) Schizophrenia Working Group of the Psychiatric Genomics Consortium (Nature 2014) 3
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
- Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PMID: 15342556) Suzuki Y … Sugano S (Genome research 2004) 3
Products for LINC02551 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC02551
- Origene Custom Protein Services for LINC02551
- Browse OriGene Inhibitory RNA Products For LINC02551
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC02551
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC02551
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse cDNA Clones
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC02551
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC02551
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC02551
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC02551
Sources for LINC02551 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB