Aliases for LINC02550 Gene

Data sources for LINC02550 Gene:

RNA type for LINC02550 Gene

lncRNA

Aliases for LINC02550 Gene

External Ids for LINC02550 Gene

Summaries for LINC02550 Gene

GeneCards Summary for LINC02550 Gene

LINC02550 (Long Intergenic Non-Protein Coding RNA 2550) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02550 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02550 Gene

Genomics for LINC02550 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02550 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J111097 Promoter/Enhancer 1.1 EPDnew Ensembl ENCODE 270.1 +82.3 82323 1 GABPB1 L3MBTL2 GABPA LINC02550 ENSG00000287028 LOC102723966 lnc-POU2AF1-6 C11orf53 ARHGAP20
GH11J111176 Enhancer 1 FANTOM5 Ensembl ENCODE 255.1 +1.6 1641 5.2 CBFB SPI1 ELF1 IKZF1 NR2F1 TCF7 ATF2 JUNB ARID3A IKZF2 LINC02550 HSALNG0087086 C11orf53 ARHGAP20
GH11J110305 Enhancer 1.1 Ensembl ENCODE 9.9 +873.7 873740 1.8 ZNF580 ATF2 CEBPA ZNF10 ZSCAN16 CEBPB FEZF1 ZNF639 KLF7 ZNF148 HSALNG0087052 ZC3H12C LINC02550 RDX lnc-FDX1-1 FDX1
GH11J111230 Promoter/Enhancer 1.1 ENCODE CraniofacialAtlas 5.5 -51.0 -51010 1.3 ZNF654 YY1 REST TRIM22 FEZF1 CTCF IRF2 RXRA RAD21 IRF4 LINC02550 piR-58297-091 C11orf53 HSALNG0087089 ARHGAP20
GH11J111080 Enhancer 0.3 Ensembl ENCODE 18.3 +98.3 98343 0.6 HSALNG0087077 LINC02550 ENSG00000271390 C11orf53 ARHGAP20
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02550 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02550 Gene

Latest Assembly
chr11:111,091,352-111,179,641
(GRCh38/hg38)
Size:
88,290 bases
Orientation:
Minus strand

Previous Assembly
chr11:110,962,656-110,968,042
(GRCh37/hg19 by Entrez Gene)
Size:
5,387 bases
Orientation:
Minus strand

chr11:110,962,656-110,968,081
(GRCh37/hg19 by Ensembl)
Size:
5,426 bases
Orientation:
Minus strand

Genomic View for LINC02550 Gene

Genes around LINC02550 on UCSC Golden Path with GeneCards custom track
LINC02550 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02550 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02550 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02550 Gene

Proteins for LINC02550 Gene

Post-translational modifications for LINC02550 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02550 Gene

Domains & Families for LINC02550 Gene

Gene Families for LINC02550 Gene

genes like me logo Genes that share domains with LINC02550: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02550 Gene

Function for LINC02550 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02550 Gene

Localization for LINC02550 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02550 Gene

Pathways & Interactions for LINC02550 Gene

PathCards logo

SuperPathways for LINC02550 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02550 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02550 Gene

Drugs & Compounds for LINC02550 Gene

No Compound Related Data Available

Transcripts for LINC02550 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02550 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000A7EDDC_9606 lncRNA 1104 3

Ensembl: ENST00000636877 (view in UCSC) ,

LncBook: HSALNT0180995,

LNCipedia: LINC02550:9,

URS00003E716C_9606 lncRNA 510 2

Ensembl: ENST00000603154 (view in UCSC) ,

LNCipedia: LINC02550:12,

URS0000BC44DA_9606 lncRNA 469 1

RefSeq: NR_149131,

URS00008B39C2_9606 lncRNA 1074 3

LncBook: HSALNT0180994,

LNCipedia: LINC02550:13,

NONCODE: NONHSAT024087.2,

URS0000D5AE37_9606 lncRNA 2514 2

LncBook: HSALNT0180993,

LNCipedia: LINC02550:10,

LINC02550 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02550 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02550 Gene

No ASD Table

Relevant External Links for LINC02550 Gene

GeneLoc Exon Structure for
LINC02550

Expression for LINC02550 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02550 Gene

Orthologs for LINC02550 Gene

Evolution for LINC02550 Gene

ENSEMBL:
Gene Tree for LINC02550 (if available)
TreeFam:
Gene Tree for LINC02550 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02550

No data available for Orthologs for LINC02550 Gene

Paralogs for LINC02550 Gene

No data available for Paralogs for LINC02550 Gene

Variants for LINC02550 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02550 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02550 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02550
Leiden Open Variation Database (LOVD)
LINC02550

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02550 Gene

Disorders for LINC02550 Gene

Additional Disease Information for LINC02550

No disorders were found for LINC02550 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02550 Gene

Publications for LINC02550 Gene

No publications were found for LINC02550 Gene.

No data available for Mastermind for LINC02550 Gene

Products for LINC02550 Gene

Sources for LINC02550 Gene