Aliases for LINC02548 Gene

Subcategory (RNA class) for LINC02548 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02548 Gene

  • Long Intergenic Non-Protein Coding RNA 2548 2 3 5
  • LINC02548 2 5 165
  • NONHSAG007711.2 91
  • HSALNG0082784 164

External Ids for LINC02548 Gene

Summaries for LINC02548 Gene

GeneCards Summary for LINC02548 Gene

LINC02548 (Long Intergenic Non-Protein Coding RNA 2548) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02548 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02548 Gene

Genomics for LINC02548 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02548 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J013782 Enhancer 0.5 Ensembl 613.9 -1.5 -1516 1.4 CTBP1 KLF1 NR4A1 ATF7 ELF1 LINC02548 ENSG00000255088 FAR1 SPON1
GH11J013775 Enhancer 0.8 Ensembl ENCODE 14.6 -6.5 -6514 3.4 CTCF ATF7 TEAD4 KDM1A FOXA1 REST RAD21 YY1 ATF2 ZNF654 LINC02548 ENSG00000255088 FAR1 SPON1
GH11J013744 Enhancer 0.3 Ensembl 8.1 -38.5 -38516 1.8 SPI1 JUN LINC02548 RASSF10 piR-50852-026 ENSG00000200685 FAR1 SPON1
GH11J013760 Enhancer 0.2 Ensembl 13.6 -24.9 -24916 0.2 ENSG00000255088 LINC02548 FAR1 SPON1
GH11J013746 Enhancer 0.2 Ensembl 8.7 -37.0 -37016 0.8 FAR1 FAR1-IT1 LINC02548 piR-50852-026 ENSG00000200685 SPON1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02548 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02548 Gene

Genomic Locations for LINC02548 Gene
chr11:13,784,017-13,848,003
(GRCh38/hg38)
Size:
63,987 bases
Orientation:
Plus strand
chr11:13,806,937-13,869,549
(GRCh37/hg19)
Size:
62,613 bases
Orientation:
Plus strand

Genomic View for LINC02548 Gene

Genes around LINC02548 on UCSC Golden Path with GeneCards custom track
LINC02548 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02548 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02548 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02548 Gene

Proteins for LINC02548 Gene

Post-translational modifications for LINC02548 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02548 Gene

Domains & Families for LINC02548 Gene

Gene Families for LINC02548 Gene

genes like me logo Genes that share domains with LINC02548: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02548 Gene

Function for LINC02548 Gene

Phenotypes From GWAS Catalog for LINC02548 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02548 Gene

Localization for LINC02548 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02548 Gene

Pathways & Interactions for LINC02548 Gene

PathCards logo

SuperPathways for LINC02548 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02548 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02548 Gene

Drugs & Compounds for LINC02548 Gene

No Compound Related Data Available

Transcripts for LINC02548 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02548 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000323B20_9606 lncRNA 484 4

Ensembl: ENST00000531749 (view in UCSC) ,

LncBook: HSALNT0172329,

LNCipedia: LINC02548:4,

NONCODE: NONHSAT018116.2,

URS0000BC461F_9606 lncRNA 484 2

HGNC: 53583,

RefSeq: NR_149108,

URS0000DB7964_9606 lncRNA 1455 1

Ensembl: ENST00000648524 (view in UCSC) ,

URS0000EEDC18_9606 lncRNA 1445 1

Ensembl: ENST00000655777 (view in UCSC) ,

URS0000EEE2C5_9606 lncRNA 1235 1

Ensembl: ENST00000664710 (view in UCSC) ,

LINC02548 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02548 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02548 Gene

No ASD Table

Relevant External Links for LINC02548 Gene

GeneLoc Exon Structure for
LINC02548

Expression for LINC02548 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02548 Gene

Orthologs for LINC02548 Gene

Evolution for LINC02548 Gene

ENSEMBL:
Gene Tree for LINC02548 (if available)
TreeFam:
Gene Tree for LINC02548 (if available)

No data available for Orthologs for LINC02548 Gene

Paralogs for LINC02548 Gene

No data available for Paralogs for LINC02548 Gene

Variants for LINC02548 Gene

Additional dbSNP identifiers (rs#s) for LINC02548 Gene

Additional Variant Information for LINC02548 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02548

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02548 Gene

Disorders for LINC02548 Gene

Additional Disease Information for LINC02548

No disorders were found for LINC02548 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02548 Gene

Publications for LINC02548 Gene

No publications were found for LINC02548 Gene.

Products for LINC02548 Gene

Sources for LINC02548 Gene