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LINC02548 Gene(RNA Gene)

Long Intergenic Non-Protein Coding RNA 2548

GCID:
GC11P013782
GIFtS:
8
Genes Participants
UDN Logo

Aliases for LINC02548 Gene

Subcategory (RNA class) for LINC02548 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02548 Gene

  • Long Intergenic Non-Protein Coding RNA 2548 2 3 5

External Ids for LINC02548 Gene

Summaries for LINC02548 Gene

GeneCards Summary for LINC02548 Gene

LINC02548 (Long Intergenic Non-Protein Coding RNA 2548) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02548 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02548 Gene

Genomics for LINC02548 Gene

GeneHancer (GH) Regulatory Elements for LINC02548 Gene

Promoters and enhancers for LINC02548 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J013781 Enhancer 0.5 ENCODE 600.7 -0.1 -50 0.1 RFX1 RFX3 BMI1 GATA3 TFAP4 JUND FOS LINC02548 ENSG00000255088
GH11J013782 Enhancer 0.5 Ensembl 613.9 +1.2 1221 1.2 CTBP1 KLF1 ATF7 ELF1 LINC02548 LINC02545
GH11J013775 Enhancer 0.6 ENCODE 14.8 -4.2 -4213 2.7 REST ATF7 CTCF ATF2 RAD21 ZNF654 ZNF143 GLIS1 LINC02548 ENSG00000255088
GH11J013759 Enhancer 0.2 Ensembl 13.7 -21.9 -21878 0.2 ENSG00000255088 LINC02548
GH11J013744 Enhancer 0.3 Ensembl 8.7 -35.2 -35178 3.2 JUN FAR1-IT1 FAR1 LINC02548 RASSF10 CENPUP1 ENSG00000200685 GC11M013687
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02548 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02548 Gene

Genomic Locations for LINC02548 Gene
chr11:13,781,379-13,848,002
(GRCh38/hg38)
Size:
66,624 bases
Orientation:
Plus strand
chr11:13,806,937-13,869,549
(GRCh37/hg19)
Size:
62,613 bases
Orientation:
Plus strand

Genomic View for LINC02548 Gene

Genes around LINC02548 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02548 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02548 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC02548 Gene

Proteins for LINC02548 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC02548 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02548 Gene

Domains & Families for LINC02548 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02548 Gene

Function for LINC02548 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02548 Gene

Localization for LINC02548 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02548 Gene

Pathways & Interactions for LINC02548 Gene

GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards
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SuperPathways for LINC02548 Gene

No Data Available

Interacting Proteins for LINC02548 Gene

Gene Ontology (GO) - Biological Process for LINC02548 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02548 Gene

Drugs & Compounds for LINC02548 Gene

Products:

  1. Drug
GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards
No Compound Related Data Available

Transcripts for LINC02548 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LINC02548 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02548 Gene

No ASD Table

Relevant External Links for LINC02548 Gene

GeneLoc Exon Structure for
LINC02548
ECgene alternative splicing isoforms for
LINC02548

Expression for LINC02548 Gene

Products:

  1. Primer
GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02548 Gene

Orthologs for LINC02548 Gene

Evolution for LINC02548 Gene

ENSEMBL:
Gene Tree for LINC02548 (if available)
TreeFam:
Gene Tree for LINC02548 (if available)

No data available for Orthologs for LINC02548 Gene

Paralogs for LINC02548 Gene

No data available for Paralogs for LINC02548 Gene

Variants for LINC02548 Gene

VarElect - NGS phenotyper. Rapid prioritization of variants from NGS data powered by 100+ GeneCards sources

Sequence variations from dbSNP and Humsavar for LINC02548 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000008799 -- 13,806,461(+) A/G intron_variant
rs1000035802 -- 13,800,422(+) C/T intron_variant
rs1000081967 -- 13,806,245(+) C/T intron_variant
rs1000087666 -- 13,844,317(+) T/G intron_variant
rs1000100299 -- 13,805,745(+) T/C intron_variant

Additional Variant Information for LINC02548 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02548

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02548 Gene

Disorders for LINC02548 Gene

Additional Disease Information for LINC02548

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC02548 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02548 Gene

Publications for LINC02548 Gene

No publications were found for LINC02548 Gene.

ExternalLinks

View latest publications for LINC02548 gene in Mastermind

Products for LINC02548 Gene

Sources for LINC02548 Gene

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