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Aliases for LINC02547 Gene

Subcategory (RNA class) for LINC02547 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02547 Gene

  • Long Intergenic Non-Protein Coding RNA 2547 2 3 5

External Ids for LINC02547 Gene

Summaries for LINC02547 Gene

GeneCards Summary for LINC02547 Gene

LINC02547 (Long Intergenic Non-Protein Coding RNA 2547) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02547 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02547 Gene

Genomics for LINC02547 Gene

GeneHancer (GH) Regulatory Elements for LINC02547 Gene

Promoters and enhancers for LINC02547 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J012028 Enhancer 1 Ensembl ENCODE dbSUPER 600.7 -1.6 -1574 3 JUN NFE2 JUND FOSL1 RAD21 RFX5 SMC3 NR2F2 TCF7L2 ZFP64 LINC02547 DKK3 MICALCL
GH11J012031 Enhancer 0.4 Ensembl dbSUPER 600.7 +1.2 1226 0.2 LINC02547 MICALCL MICAL2 ENSG00000254991
GH11J012041 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 0.4 +12.7 12684 4 CC2D1A ELF3 CTCF ZKSCAN8 MNT ZNF148 MLLT1 GTF2F1 TFE3 TRIM24 DKK3 LINC02547 ENSG00000254991
GH11J012066 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 0.3 +36.0 36047 3.4 ZNF121 CEBPG AHR MAFK TFE3 TRIM24 SP7 SP1 ZNF644 MZF1 ENSG00000254991 MICALCL MICAL2 LINC02547
GH11J012016 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -10.7 -10674 6.8 CBFA2T2 IKZF1 PKNOX1 ZNF316 MNT CTBP1 ZNF766 GABPA MEF2D GATA3 DKK3 MICALCL MICAL2 LINC02547
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02547 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02547 Gene

Genomic Locations for LINC02547 Gene
chr11:12,030,875-12,061,791
(GRCh38/hg38)
Size:
30,917 bases
Orientation:
Plus strand
chr11:12,052,422-12,083,332
(GRCh37/hg19)
Size:
30,911 bases
Orientation:
Plus strand

Genomic View for LINC02547 Gene

Genes around LINC02547 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02547 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02547 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02547 Gene

Proteins for LINC02547 Gene

Post-translational modifications for LINC02547 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02547 Gene

Domains & Families for LINC02547 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02547 Gene

Function for LINC02547 Gene

Phenotypes From GWAS Catalog for LINC02547 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02547 Gene

Localization for LINC02547 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02547 Gene

Pathways & Interactions for LINC02547 Gene

PathCards logo

SuperPathways for LINC02547 Gene

No Data Available

Interacting Proteins for LINC02547 Gene

Gene Ontology (GO) - Biological Process for LINC02547 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02547 Gene

Drugs & Compounds for LINC02547 Gene

No Compound Related Data Available

Transcripts for LINC02547 Gene

mRNA/cDNA for LINC02547 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02547 Gene

No ASD Table

Relevant External Links for LINC02547 Gene

GeneLoc Exon Structure for
LINC02547
ECgene alternative splicing isoforms for
LINC02547

Expression for LINC02547 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02547 Gene

Orthologs for LINC02547 Gene

Evolution for LINC02547 Gene

ENSEMBL:
Gene Tree for LINC02547 (if available)
TreeFam:
Gene Tree for LINC02547 (if available)

No data available for Orthologs for LINC02547 Gene

Paralogs for LINC02547 Gene

No data available for Paralogs for LINC02547 Gene

Variants for LINC02547 Gene

Sequence variations from dbSNP and Humsavar for LINC02547 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000070354 -- 12,060,195(+) C/T non_coding_transcript_variant
rs1000085590 -- 12,054,882(+) C/T intron_variant
rs1000161971 -- 12,033,322(+) C/T intron_variant
rs1000220941 -- 12,055,056(+) T/C intron_variant
rs1000244914 -- 12,050,245(+) G/T intron_variant

Additional Variant Information for LINC02547 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02547

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02547 Gene

Disorders for LINC02547 Gene

Additional Disease Information for LINC02547

No disorders were found for LINC02547 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02547 Gene

Publications for LINC02547 Gene

No publications were found for LINC02547 Gene.

Products for LINC02547 Gene

Sources for LINC02547 Gene

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