Aliases for LINC02547 Gene

Subcategory (RNA class) for LINC02547 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02547 Gene

  • Long Intergenic Non-Protein Coding RNA 2547 2 3 5
  • LINC02547 2 5 165
  • NONHSAG007673.2 91
  • HSALNG0082710 164

External Ids for LINC02547 Gene

Summaries for LINC02547 Gene

GeneCards Summary for LINC02547 Gene

LINC02547 (Long Intergenic Non-Protein Coding RNA 2547) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02547 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02547 Gene

Genomics for LINC02547 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02547 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J012028 Enhancer 1 Ensembl ENCODE dbSUPER 600.7 -1.7 -1682 3.2 NFE2 FOS JUN JUND FOSL1 NR2F2 RAD21 RFX5 SMC3 NR2F1 LINC02547 DKK3 MICALCL MICAL2
GH11J012031 Enhancer 0.3 Ensembl dbSUPER 600.7 +1.2 1226 0.2 LINC02547 MICALCL MICAL2 piR-60146-018 DKK3
GH11J012041 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 0.4 +12.7 12684 4 GATAD2A CTCF ATF7 PRDM10 ZNF629 TFE3 IKZF1 NFKBIZ ZNF7 JUND DKK3 piR-32539-004 LINC02547 RF00017-865 MICAL2 MICALCL
GH11J012016 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -12.0 -12022 4.9 IKZF1 CTCF PKNOX1 MNT ZNF766 HMBOX1 CTBP1 ZNF316 GABPA MEF2D DKK3 MICALCL MICAL2 LINC02547
GH11J012050 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +20.2 20187 1.7 REST ZIC2 SP1 ESR1 FOXA2 NR3C1 ATF3 YY1 GABPA ZBTB33 DKK3 MICAL2 RF00017-865 piR-32539-004 LINC02547 MICALCL
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02547 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02547 Gene

Genomic Locations for LINC02547 Gene
chr11:12,030,875-12,061,785
(GRCh38/hg38)
Size:
30,911 bases
Orientation:
Plus strand
chr11:12,052,422-12,083,332
(GRCh37/hg19)
Size:
30,911 bases
Orientation:
Plus strand

Genomic View for LINC02547 Gene

Genes around LINC02547 on UCSC Golden Path with GeneCards custom track
LINC02547 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02547 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02547 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02547 Gene

Proteins for LINC02547 Gene

Post-translational modifications for LINC02547 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02547 Gene

Domains & Families for LINC02547 Gene

Gene Families for LINC02547 Gene

genes like me logo Genes that share domains with LINC02547: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02547 Gene

Function for LINC02547 Gene

Phenotypes From GWAS Catalog for LINC02547 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02547 Gene

Localization for LINC02547 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02547 Gene

Pathways & Interactions for LINC02547 Gene

PathCards logo

SuperPathways for LINC02547 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02547 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02547 Gene

Drugs & Compounds for LINC02547 Gene

No Compound Related Data Available

Transcripts for LINC02547 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02547 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000CF9B3_9606 lncRNA 3308 6

HGNC: 53582,

RefSeq: NR_135109,

Ensembl: ENST00000531559 (view in UCSC) ,

LncBook: HSALNT0172175,

LNCipedia: LINC02547:3,

NONCODE: NONHSAT018035.2,

LINC02547 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02547 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02547 Gene

No ASD Table

Relevant External Links for LINC02547 Gene

GeneLoc Exon Structure for
LINC02547

Expression for LINC02547 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02547 Gene

Orthologs for LINC02547 Gene

Evolution for LINC02547 Gene

ENSEMBL:
Gene Tree for LINC02547 (if available)
TreeFam:
Gene Tree for LINC02547 (if available)

No data available for Orthologs for LINC02547 Gene

Paralogs for LINC02547 Gene

No data available for Paralogs for LINC02547 Gene

Variants for LINC02547 Gene

Additional dbSNP identifiers (rs#s) for LINC02547 Gene

Additional Variant Information for LINC02547 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02547

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02547 Gene

Disorders for LINC02547 Gene

Additional Disease Information for LINC02547

No disorders were found for LINC02547 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02547 Gene

Publications for LINC02547 Gene

No publications were found for LINC02547 Gene.

Products for LINC02547 Gene

Sources for LINC02547 Gene