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LINC02545 Gene(RNA Gene)

Long Intergenic Non-Protein Coding RNA 2545

GCID:
GC11M013845
GIFtS:
9
Genes Participants
UDN Logo

Aliases for LINC02545 Gene

Subcategory (RNA class) for LINC02545 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02545 Gene

  • Long Intergenic Non-Protein Coding RNA 2545 2 3 5

External Ids for LINC02545 Gene

Summaries for LINC02545 Gene

GeneCards Summary for LINC02545 Gene

LINC02545 (Long Intergenic Non-Protein Coding RNA 2545) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02545 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02545 Gene

Genomics for LINC02545 Gene

GeneHancer (GH) Regulatory Elements for LINC02545 Gene

Promoters and enhancers for LINC02545 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH11J013872 Enhancer 0.9 ENCODE 600.7 -1.2 -1225 1.6 CBFA2T2 GTF2F1 ZSCAN21 CTCF TRIM24 SP7 SMARCA4 MTA1 GMEB1 PKNOX1 LINC02545 ENSG00000254927
GH11J013869 Enhancer 0.6 Ensembl ENCODE 0.7 +3.2 3220 2.8 PRDM1 CEBPB JUND LINC02545 ENSG00000254927 LINC02548
GH11J013875 Enhancer 0.6 Ensembl ENCODE dbSUPER 0.7 -3.6 -3580 0.8 LINC02545 ENSG00000254927
GH11J013874 Enhancer 0.6 Ensembl dbSUPER 0.7 -2.4 -2380 0.4 IKZF1 KLF1 ENSG00000254927 LINC02545
GH11J013876 Enhancer 0.4 Ensembl dbSUPER 0.7 -4.5 -4480 0.2 LINC02545 ENSG00000254927
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02545 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02545 Gene

Genomic Locations for LINC02545 Gene
chr11:13,844,758-13,872,421
(GRCh38/hg38)
Size:
27,664 bases
Orientation:
Minus strand
chr11:13,866,409-13,892,163
(GRCh37/hg19)
Size:
25,755 bases
Orientation:
Minus strand

Genomic View for LINC02545 Gene

Genes around LINC02545 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02545 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02545 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC02545 Gene

Proteins for LINC02545 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC02545 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02545 Gene

Domains & Families for LINC02545 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02545 Gene

Function for LINC02545 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02545 Gene

Localization for LINC02545 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02545 Gene

Pathways & Interactions for LINC02545 Gene

GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards
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SuperPathways for LINC02545 Gene

No Data Available

Interacting Proteins for LINC02545 Gene

Gene Ontology (GO) - Biological Process for LINC02545 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02545 Gene

Drugs & Compounds for LINC02545 Gene

Products:

  1. Drug
GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards
No Compound Related Data Available

Transcripts for LINC02545 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LINC02545 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02545 Gene

No ASD Table

Relevant External Links for LINC02545 Gene

GeneLoc Exon Structure for
LINC02545
ECgene alternative splicing isoforms for
LINC02545

Expression for LINC02545 Gene

Products:

  1. Primer
GeneAnalytics - gene set analysis. Cells, Diseases, Pathways, Function and Compounds, relevant to your gene set. Powered by GeneCards
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02545 Gene

Orthologs for LINC02545 Gene

Evolution for LINC02545 Gene

ENSEMBL:
Gene Tree for LINC02545 (if available)
TreeFam:
Gene Tree for LINC02545 (if available)

No data available for Orthologs for LINC02545 Gene

Paralogs for LINC02545 Gene

No data available for Paralogs for LINC02545 Gene

Variants for LINC02545 Gene

VarElect - NGS phenotyper. Rapid prioritization of variants from NGS data powered by 100+ GeneCards sources

Sequence variations from dbSNP and Humsavar for LINC02545 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000220875 -- 13,858,131(-) A/G intron_variant
rs1000288994 -- 13,864,314(-) T/C/G intron_variant
rs1000328123 -- 13,867,617(-) G/A intron_variant
rs1000387957 -- 13,869,924(-) A/G intron_variant
rs1000512415 -- 13,859,413(-) C/T intron_variant

Additional Variant Information for LINC02545 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02545

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02545 Gene

Disorders for LINC02545 Gene

Additional Disease Information for LINC02545

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC02545 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02545 Gene

Publications for LINC02545 Gene

No publications were found for LINC02545 Gene.

ExternalLinks

View latest publications for LINC02545 gene in Mastermind

Products for LINC02545 Gene

Sources for LINC02545 Gene

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