Aliases for LINC02545 Gene

Subcategory (RNA class) for LINC02545 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02545 Gene

  • Long Intergenic Non-Protein Coding RNA 2545 2 3 5
  • LINC02545 2 5 165
  • NONHSAG007713.2 91
  • HSALNG0082786 164

External Ids for LINC02545 Gene

Summaries for LINC02545 Gene

GeneCards Summary for LINC02545 Gene

LINC02545 (Long Intergenic Non-Protein Coding RNA 2545) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02545 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02545 Gene

Genomics for LINC02545 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02545 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J013872 Enhancer 0.9 ENCODE 600.7 -1.2 -1240 1.6 CTCF ZNF629 ZNF512 LEF1 IKZF1 ZNF692 JUND MTA2 PHF21A ZIC2 LINC02545 ENSG00000254927 SPON1 FAR1
GH11J013869 Enhancer 0.6 Ensembl ENCODE 0.7 +2.9 2905 3 PRDM1 CEBPB JUND LINC02545 piR-41525-084 ENSG00000254927 SPON1 FAR1
GH11J013875 Enhancer 0.5 Ensembl ENCODE dbSUPER 0.7 -3.3 -3295 1 ENSG00000254927 LINC02545 SPON1 FAR1
GH11J013848 Enhancer 0.4 Ensembl 0.4 +21.2 21205 5.6 ZNF316 ZFHX2 MAFK EGR2 piR-41525-084 LINC02545 ENSG00000254927 piR-33605-066 SPON1 FAR1
GH11J013859 Enhancer 0.2 Ensembl 0.4 +11.5 11505 1.8 piR-41525-084 LINC02545 ENSG00000254927 piR-33605-066 SPON1 FAR1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02545 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02545 Gene

Genomic Locations for LINC02545 Gene
chr11:13,844,862-13,872,406
(GRCh38/hg38)
Size:
27,545 bases
Orientation:
Minus strand
chr11:13,866,409-13,892,163
(GRCh37/hg19)
Size:
25,755 bases
Orientation:
Minus strand

Genomic View for LINC02545 Gene

Genes around LINC02545 on UCSC Golden Path with GeneCards custom track
LINC02545 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02545 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02545 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02545 Gene

Proteins for LINC02545 Gene

Post-translational modifications for LINC02545 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02545 Gene

Domains & Families for LINC02545 Gene

Gene Families for LINC02545 Gene

genes like me logo Genes that share domains with LINC02545: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02545 Gene

Function for LINC02545 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02545 Gene

Localization for LINC02545 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02545 Gene

Pathways & Interactions for LINC02545 Gene

PathCards logo

SuperPathways for LINC02545 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02545 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02545 Gene

Drugs & Compounds for LINC02545 Gene

No Compound Related Data Available

Transcripts for LINC02545 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02545 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003B2E19_9606 lncRNA 306 6

HGNC: 53580,

RefSeq: NR_149109,

Ensembl: ENST00000525381 (view in UCSC) ,

LncBook: HSALNT0172331,

LNCipedia: LINC02545:3,

NONCODE: NONHSAT018118.2,

URS00009B401E_9606 lncRNA 348 1

NONCODE: NONHSAT160096.1,

LINC02545 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02545 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02545 Gene

No ASD Table

Relevant External Links for LINC02545 Gene

GeneLoc Exon Structure for
LINC02545

Expression for LINC02545 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02545 Gene

Orthologs for LINC02545 Gene

Evolution for LINC02545 Gene

ENSEMBL:
Gene Tree for LINC02545 (if available)
TreeFam:
Gene Tree for LINC02545 (if available)

No data available for Orthologs for LINC02545 Gene

Paralogs for LINC02545 Gene

No data available for Paralogs for LINC02545 Gene

Variants for LINC02545 Gene

Additional dbSNP identifiers (rs#s) for LINC02545 Gene

Additional Variant Information for LINC02545 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02545

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02545 Gene

Disorders for LINC02545 Gene

Additional Disease Information for LINC02545

No disorders were found for LINC02545 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02545 Gene

Publications for LINC02545 Gene

No publications were found for LINC02545 Gene.

Products for LINC02545 Gene

Sources for LINC02545 Gene