Aliases for LINC02539 Gene

Subcategory (RNA class) for LINC02539 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02539 Gene

  • Long Intergenic Non-Protein Coding RNA 2539 2 3 5
  • LINC02539 2 5 165
  • RP11-356I2.2 2 3
  • NONHSAG044952.2 91
  • HSALNG0053782 164

External Ids for LINC02539 Gene

Summaries for LINC02539 Gene

GeneCards Summary for LINC02539 Gene

LINC02539 (Long Intergenic Non-Protein Coding RNA 2539) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02539 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02539 Gene

Genomics for LINC02539 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02539 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02539 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02539 Gene

Genomic Locations for LINC02539 Gene
chr6:137,730,170-137,792,835
(GRCh38/hg38)
Size:
62,666 bases
Orientation:
Minus strand
chr6:138,051,307-138,060,174
(GRCh37/hg19)
Size:
8,868 bases
Orientation:
Minus strand

Genomic View for LINC02539 Gene

Genes around LINC02539 on UCSC Golden Path with GeneCards custom track
LINC02539 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02539 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02539 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02539 Gene

Proteins for LINC02539 Gene

Post-translational modifications for LINC02539 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02539 Gene

Domains & Families for LINC02539 Gene

Gene Families for LINC02539 Gene

genes like me logo Genes that share domains with LINC02539: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02539 Gene

Function for LINC02539 Gene

Phenotypes From GWAS Catalog for LINC02539 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02539 Gene

Localization for LINC02539 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02539 Gene

Pathways & Interactions for LINC02539 Gene

PathCards logo

SuperPathways for LINC02539 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02539 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02539 Gene

Drugs & Compounds for LINC02539 Gene

No Compound Related Data Available

Transcripts for LINC02539 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02539 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000459FAB_9606 lncRNA 737 3

Ensembl: ENST00000411615 (view in UCSC) ,

LNCipedia: LINC02539:14,

NONCODE: NONHSAT115173.2,

URS0000140C75_9606 lncRNA 703 3

Ensembl: ENST00000419220 (view in UCSC) ,

LNCipedia: LINC02539:13,

NONCODE: NONHSAT115172.2,

URS000075BD5C_9606 lncRNA 788 2

HGNC: 53572,

RefSeq: NR_121618,

URS0000D61370_9606 lncRNA 641 2

Ensembl: ENST00000645996 (view in UCSC) ,

LNCipedia: LINC02539:2,

URS0000EEDDAD_9606 lncRNA 807 1

Ensembl: ENST00000668179 (view in UCSC) ,

LINC02539 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02539 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02539 Gene

No ASD Table

Relevant External Links for LINC02539 Gene

GeneLoc Exon Structure for
LINC02539

Expression for LINC02539 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02539

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02539 Gene

Orthologs for LINC02539 Gene

Evolution for LINC02539 Gene

ENSEMBL:
Gene Tree for LINC02539 (if available)
TreeFam:
Gene Tree for LINC02539 (if available)

No data available for Orthologs for LINC02539 Gene

Paralogs for LINC02539 Gene

No data available for Paralogs for LINC02539 Gene

Variants for LINC02539 Gene

Additional dbSNP identifiers (rs#s) for LINC02539 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02539 Gene

Variant ID Type Subtype PubMed ID
nsv470863 CNV loss 18288195
nsv5492 CNV insertion 18451855
nsv830817 CNV gain 17160897

Additional Variant Information for LINC02539 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02539

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02539 Gene

Disorders for LINC02539 Gene

Additional Disease Information for LINC02539

No disorders were found for LINC02539 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02539 Gene

Publications for LINC02539 Gene

No publications were found for LINC02539 Gene.

Products for LINC02539 Gene

Sources for LINC02539 Gene