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Aliases for LINC02539 Gene

Subcategory (RNA class) for LINC02539 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02539 Gene

  • Long Intergenic Non-Protein Coding RNA 2539 2 3 5
  • RP11-356I2.2 3

External Ids for LINC02539 Gene

Summaries for LINC02539 Gene

GeneCards Summary for LINC02539 Gene

LINC02539 (Long Intergenic Non-Protein Coding RNA 2539) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02539 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02539 Gene

Genomics for LINC02539 Gene

GeneHancer (GH) Regulatory Elements for LINC02539 Gene

Promoters and enhancers for LINC02539 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J137789 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 650.7 +1.3 1313 3.1 HDGF HDAC1 PKNOX1 BMI1 BATF ZNF766 ATF7 ETV6 BCLAF1 IKZF2 LINC02539 TNFAIP3 OLIG3 ENSG00000207300
GH06J137793 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -2.3 -2264 2.6 PKNOX1 FOXA2 MLX ARID4B ETS1 SLC30A9 ZFP91 ATF7 RUNX3 NFKBIZ TNFAIP3 LINC02539
GH06J137810 Enhancer 2 VISTA FANTOM5 Ensembl ENCODE dbSUPER 0.4 -19.4 -19353 3.7 HDGF PKNOX1 FOXA2 SMAD1 MLX ARNT ARID4B DMAP1 SLC30A9 POLR2B TNFAIP3 LOC100130476 LINC02539
GH06J137819 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.3 -29.8 -29803 6.4 PKNOX1 ATF1 NEUROD1 BMI1 RFX5 ZNF335 ZNF366 SCRT2 ZNF350 FOS TNFAIP3 LOC100130476 LINC02539
GH06J137798 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -8.1 -8052 5.1 FOXA2 MLX ARNT ARID4B ARID2 ZNF143 ATF7 RUNX3 SP5 NCOA1 TNFAIP3 LOC100130476 LINC02539
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02539 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02539 Gene

Genomic Locations for LINC02539 Gene
chr6:137,730,170-137,792,835
(GRCh38/hg38)
Size:
62,666 bases
Orientation:
Minus strand
chr6:138,051,307-138,060,174
(GRCh37/hg19)
Size:
8,868 bases
Orientation:
Minus strand

Genomic View for LINC02539 Gene

Genes around LINC02539 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02539 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02539 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02539 Gene

Proteins for LINC02539 Gene

Post-translational modifications for LINC02539 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02539 Gene

Domains & Families for LINC02539 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02539 Gene

Function for LINC02539 Gene

Phenotypes From GWAS Catalog for LINC02539 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02539 Gene

Localization for LINC02539 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02539 Gene

Pathways & Interactions for LINC02539 Gene

SuperPathways for LINC02539 Gene

No Data Available

Interacting Proteins for LINC02539 Gene

Gene Ontology (GO) - Biological Process for LINC02539 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02539 Gene

Drugs & Compounds for LINC02539 Gene

No Compound Related Data Available

Transcripts for LINC02539 Gene

mRNA/cDNA for LINC02539 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(4) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02539 Gene

No ASD Table

Relevant External Links for LINC02539 Gene

GeneLoc Exon Structure for
LINC02539
ECgene alternative splicing isoforms for
LINC02539

Expression for LINC02539 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02539 Gene

Orthologs for LINC02539 Gene

Evolution for LINC02539 Gene

ENSEMBL:
Gene Tree for LINC02539 (if available)
TreeFam:
Gene Tree for LINC02539 (if available)

No data available for Orthologs for LINC02539 Gene

Paralogs for LINC02539 Gene

No data available for Paralogs for LINC02539 Gene

Variants for LINC02539 Gene

Sequence variations from dbSNP and Humsavar for LINC02539 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000749926 -- 137,740,234(-) T/C upstream_transcript_variant
rs1000919442 -- 137,730,186(-) A/C non_coding_transcript_variant
rs1001135428 -- 137,738,954(-) T/C non_coding_transcript_variant
rs1001246301 -- 137,734,891(-) G/A intron_variant
rs1002175339 -- 137,736,091(-) A/T intron_variant

Additional Variant Information for LINC02539 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02539

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02539 Gene

Disorders for LINC02539 Gene

Additional Disease Information for LINC02539

No disorders were found for LINC02539 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02539 Gene

Publications for LINC02539 Gene

No publications were found for LINC02539 Gene.

Products for LINC02539 Gene

Sources for LINC02539 Gene

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