Aliases for LINC02528 Gene

Subcategory (RNA class) for LINC02528 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for LINC02528 Gene

  • Long Intergenic Non-Protein Coding RNA 2528 2 3 5
  • LINC02528 2 5
  • NONHSAG044962.2 91
  • HSALNG0053802 164
  • Lnc-PERP-1 165

External Ids for LINC02528 Gene

Summaries for LINC02528 Gene

GeneCards Summary for LINC02528 Gene

LINC02528 (Long Intergenic Non-Protein Coding RNA 2528) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02528 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02528 Gene

Genomics for LINC02528 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02528 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J137959 Enhancer 1 FANTOM5 Ensembl dbSUPER 610.7 -1.3 -1289 4.8 ZNF512 IKZF1 ZNF740 ZNF316 NR2C2 NCOR1 RELA ZNF644 CEBPG IRF2 LINC02528 TNFAIP3 WAKMAR2 LINC02865 LOC107986545 PERP
GH06J137939 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 9.7 +17.6 17587 1.2 SP1 GATAD2A CTCF POLR2A STAT3 ZNF143 RELA REST RAD21 IKZF2 TNFAIP3 WAKMAR2 LINC02528 OLIG3 LINC02865 piR-41306-234 PERP
GH06J137949 Enhancer 1 Ensembl ENCODE dbSUPER 11.1 +6.7 6659 3.3 STAT3 RAD21 IKZF2 ZNF24 TRIM22 RELA DPF2 CTCF RELB RUNX3 TNFAIP3 WAKMAR2 LINC02528 PERP LINC02865
GH06J137945 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 +12.8 12807 0.2 CTCF STAT3 DDX20 ZNF143 REST BRD9 TRIM22 GATAD2B SCRT2 ARID3A LINC02865 WAKMAR2 TNFAIP3 LINC02528 piR-41306-234 PERP
GH06J137968 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 0.4 -11.4 -11392 0.3 LEF1 JUND MTA2 MTA1 DPF2 HDAC1 SOX6 TCF12 EP300 HMBOX1 TNFAIP3 LOC107986545 LINC02528 LINC02865 PERP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02528 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02528 Gene

Genomic Locations for LINC02528 Gene
chr6:137,940,927-137,957,711
(GRCh38/hg38)
Size:
16,785 bases
Orientation:
Minus strand
chr6:138,264,216-138,266,939
(GRCh37/hg19)
Size:
2,724 bases
Orientation:
Minus strand

Genomic View for LINC02528 Gene

Genes around LINC02528 on UCSC Golden Path with GeneCards custom track
LINC02528 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02528 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02528 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02528 Gene

Proteins for LINC02528 Gene

Post-translational modifications for LINC02528 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02528 Gene

Domains & Families for LINC02528 Gene

Gene Families for LINC02528 Gene

genes like me logo Genes that share domains with LINC02528: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02528 Gene

Function for LINC02528 Gene

Phenotypes From GWAS Catalog for LINC02528 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02528 Gene

Localization for LINC02528 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02528 Gene

Pathways & Interactions for LINC02528 Gene

PathCards logo

SuperPathways for LINC02528 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02528 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02528 Gene

Drugs & Compounds for LINC02528 Gene

No Compound Related Data Available

Transcripts for LINC02528 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02528 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000340BF5_9606 lncRNA 573 3

Ensembl: ENST00000417932 (view in UCSC) ,

LNCipedia: lnc-PERP-1:1,

NONCODE: NONHSAT115194.2,

URS0000BC4578_9606 lncRNA 573 2

HGNC: 53554,

RefSeq: NR_149097,

URS0000D59C91_9606 lncRNA 2759 2

LncBook: HSALNT0113983,

LNCipedia: lnc-PERP-1:6,

URS00019CD970_9606 lncRNA 4549 1

ENA: MN298343.1:1..4549:ncRNA,

URS0000D5823E_9606 lncRNA 4363 1

LNCipedia: lnc-PERP-1:4,

LINC02528 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02528 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02528 Gene

No ASD Table

Relevant External Links for LINC02528 Gene

GeneLoc Exon Structure for
LINC02528

Expression for LINC02528 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02528 Gene

Orthologs for LINC02528 Gene

Evolution for LINC02528 Gene

ENSEMBL:
Gene Tree for LINC02528 (if available)
TreeFam:
Gene Tree for LINC02528 (if available)

No data available for Orthologs for LINC02528 Gene

Paralogs for LINC02528 Gene

No data available for Paralogs for LINC02528 Gene

Variants for LINC02528 Gene

Additional dbSNP identifiers (rs#s) for LINC02528 Gene

Additional Variant Information for LINC02528 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02528

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02528 Gene

Disorders for LINC02528 Gene

No disorders were found for LINC02528 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02528 Gene

Publications for LINC02528 Gene

No publications were found for LINC02528 Gene.

No data available for Mastermind for LINC02528 Gene

Products for LINC02528 Gene

Sources for LINC02528 Gene