Aliases for LINC02517 Gene

Subcategory (RNA class) for LINC02517 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02517 Gene

  • Long Intergenic Non-Protein Coding RNA 2517 2 3 5
  • LINC02517 2 5 165
  • NONHSAG037431.2 91
  • HSALNG0032734 164

External Ids for LINC02517 Gene

Summaries for LINC02517 Gene

GeneCards Summary for LINC02517 Gene

LINC02517 (Long Intergenic Non-Protein Coding RNA 2517) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02517 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02517 Gene

Genomics for LINC02517 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02517 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J008315 Promoter/Enhancer 1.4 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 -3.4 -3404 8.2 HNRNPL CTCF ZIC2 ZSCAN4 PATZ1 REST SP1 ZFX SCRT2 JUND LINC02517 SH3TC1 GMPSP1 LOC112268463 HTRA3 TRMT44
GH04J008321 Enhancer 0.9 Ensembl ENCODE 0.7 +3.9 3938 4.9 CREB1 ATF7 YBX1 MTA2 MTA1 ZNF140 RFX1 CTBP1 TSC22D4 ZBTB5 ENPP7P10 TRMT44 GPR78 CPZ ENSG00000251615 SH3TC1 GMPSP1 HTRA3 LINC02517 HSALNG0032738
GH04J008309 Enhancer 0.7 Ensembl ENCODE 0.4 -10.3 -10304 2 ZBTB33 CEBPB FOXK2 BCOR MNT TFAP4 HLF CTCF EGR1 LOC112268463 LINC02517 HTRA3 TRMT44
GH04J008330 Enhancer 0.4 Ensembl 0.4 +10.9 10895 2 SP1 NR2F2 NR3C1 ACOX3 HSALNG0032738 LINC02517 HTRA3 TRMT44
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02517 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02517 Gene

Genomic Locations for LINC02517 Gene
chr4:8,320,105-8,327,165
(GRCh38/hg38)
Size:
7,061 bases
Orientation:
Plus strand
chr4:8,321,903-8,325,590
(GRCh37/hg19)
Size:
3,688 bases
Orientation:
Plus strand

Genomic View for LINC02517 Gene

Genes around LINC02517 on UCSC Golden Path with GeneCards custom track
LINC02517 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02517 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02517 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02517 Gene

Proteins for LINC02517 Gene

Post-translational modifications for LINC02517 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02517 Gene

Domains & Families for LINC02517 Gene

Gene Families for LINC02517 Gene

genes like me logo Genes that share domains with LINC02517: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02517 Gene

Function for LINC02517 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02517 Gene

Localization for LINC02517 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02517 Gene

Pathways & Interactions for LINC02517 Gene

PathCards logo

SuperPathways for LINC02517 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02517 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02517 Gene

Drugs & Compounds for LINC02517 Gene

No Compound Related Data Available

Transcripts for LINC02517 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02517 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000033C127_9606 lncRNA 492 4

Ensembl: ENST00000509453 (view in UCSC) ,

LncBook: HSALNT0068800,

LNCipedia: LINC02517:10,

NONCODE: NONHSAT095086.2,

URS0000D5EFB4_9606 lncRNA 1364 2

Ensembl: ENST00000646635 (view in UCSC) ,

LNCipedia: LINC02517:2,

URS0000BC448D_9606 lncRNA 788 2

HGNC: 53506,

RefSeq: NR_149125,

URS0000EF265A_9606 lncRNA 1644 1

Ensembl: ENST00000661956 (view in UCSC) ,

URS0000EF4CB7_9606 lncRNA 1003 1

Ensembl: ENST00000658537 (view in UCSC) ,

LINC02517 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02517 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02517 Gene

No ASD Table

Relevant External Links for LINC02517 Gene

GeneLoc Exon Structure for
LINC02517

Expression for LINC02517 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02517 Gene

Orthologs for LINC02517 Gene

Evolution for LINC02517 Gene

ENSEMBL:
Gene Tree for LINC02517 (if available)
TreeFam:
Gene Tree for LINC02517 (if available)

No data available for Orthologs for LINC02517 Gene

Paralogs for LINC02517 Gene

No data available for Paralogs for LINC02517 Gene

Variants for LINC02517 Gene

Additional dbSNP identifiers (rs#s) for LINC02517 Gene

Additional Variant Information for LINC02517 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02517

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02517 Gene

Disorders for LINC02517 Gene

Additional Disease Information for LINC02517

No disorders were found for LINC02517 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02517 Gene

Publications for LINC02517 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3

No data available for Mastermind for LINC02517 Gene

Products for LINC02517 Gene

Sources for LINC02517 Gene