Aliases for LINC02509 Gene

Data sources for LINC02509 Gene:

RNA type for LINC02509 Gene

lncRNA

Aliases for LINC02509 Gene

External Ids for LINC02509 Gene

Summaries for LINC02509 Gene

GeneCards Summary for LINC02509 Gene

LINC02509 (Long Intergenic Non-Protein Coding RNA 2509) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02509 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02509 Gene

Genomics for LINC02509 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02509 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J176875 Promoter/Enhancer 0.7 EPDnew Ensembl ENCODE 262.3 -0.3 -261 0.8 LINC02509 ENSG00000249458 piR-50444-356 VEGFC NEIL3 ENSG00000287544
GH04J176901 Enhancer 1 FANTOM5 ENCODE dbSUPER 11.3 +27.4 27389 2.3 BCL11A CBFB BATF JUND IKZF1 BMI1 ATF2 JUNB BHLHE40 ZNF217 LINC02509 HSALNG0038728 VEGFC ENSG00000287544 NEIL3
GH04J176882 Enhancer 0.9 ENCODE dbSUPER 12.1 +8.2 8246 3.3 FEZF1 ZNF639 ZNF843 ZNF189 FOXA1 JUND ZNF362 SP7 TRIM28 ZNF561 LINC02509 HSALNG0038728 VEGFC ENSG00000287544 NEIL3
GH04J176920 Enhancer 0.8 FANTOM5 Ensembl dbSUPER 11 +45.2 45213 1.8 JUND POLR2A EP300 FOS CEBPB HSALNG0038728 LINC02509 VEGFC NEIL3 ENSG00000287544
GH04J176906 Enhancer 0.5 Ensembl dbSUPER 11.2 +31.2 31213 0.2 PKNOX1 ZNF629 LINC02509 HSALNG0038728 VEGFC ENSG00000287544 NEIL3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02509 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02509 Gene

Latest Assembly
chr4:176,875,688-176,908,031
(GRCh38/hg38)
Size:
32,344 bases
Orientation:
Plus strand

Previous Assembly
chr4:177,796,856-177,801,754
(GRCh37/hg19 by Entrez Gene)
Size:
4,899 bases
Orientation:
Plus strand

chr4:177,796,856-177,801,759
(GRCh37/hg19 by Ensembl)
Size:
4,904 bases
Orientation:
Plus strand

Genomic View for LINC02509 Gene

Genes around LINC02509 on UCSC Golden Path with GeneCards custom track
LINC02509 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02509 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02509 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02509 Gene

Proteins for LINC02509 Gene

Post-translational modifications for LINC02509 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02509 Gene

Domains & Families for LINC02509 Gene

Gene Families for LINC02509 Gene

genes like me logo Genes that share domains with LINC02509: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02509 Gene

Function for LINC02509 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02509 Gene

Localization for LINC02509 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02509 Gene

Pathways & Interactions for LINC02509 Gene

PathCards logo

SuperPathways for LINC02509 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02509 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02509 Gene

Drugs & Compounds for LINC02509 Gene

No Compound Related Data Available

Transcripts for LINC02509 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02509 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00003743CA_9606 lncRNA 691 4

Ensembl: ENST00000508790 (view in UCSC) ,

LncBook: HSALNT0081309,

LNCipedia: LINC02509:4,

NONCODE: NONHSAT099370.2,

URS0000BC4457_9606 lncRNA 686 1

RefSeq: NR_149104,

URS0000EF122E_9606 lncRNA 685 1

Ensembl: ENST00000667277 (view in UCSC) ,

URS0000EEE4AA_9606 lncRNA 643 1

Ensembl: ENST00000661162 (view in UCSC) ,

URS0000EF6480_9606 lncRNA 597 1

Ensembl: ENST00000670563 (view in UCSC) ,

LINC02509 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02509 Gene

No ASD Table

Relevant External Links for LINC02509 Gene

GeneLoc Exon Structure for
LINC02509

No data available for mRNA/cDNA for LINC02509 Gene

Expression for LINC02509 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02509

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02509 Gene

Orthologs for LINC02509 Gene

Evolution for LINC02509 Gene

ENSEMBL:
Gene Tree for LINC02509 (if available)
TreeFam:
Gene Tree for LINC02509 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02509

No data available for Orthologs for LINC02509 Gene

Paralogs for LINC02509 Gene

No data available for Paralogs for LINC02509 Gene

Variants for LINC02509 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02509 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02509 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02509
Leiden Open Variation Database (LOVD)
LINC02509

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02509 Gene

Disorders for LINC02509 Gene

Additional Disease Information for LINC02509

No disorders were found for LINC02509 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02509 Gene

Publications for LINC02509 Gene

No publications were found for LINC02509 Gene.

No data available for Mastermind for LINC02509 Gene

Products for LINC02509 Gene

Sources for LINC02509 Gene