Aliases for LINC02509 Gene

Subcategory (RNA class) for LINC02509 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC02509 Gene

  • Long Intergenic Non-Protein Coding RNA 2509 2 3 5
  • LINC02509 2 168
  • NONHSAG039408 92
  • HSALNG0038727 167

External Ids for LINC02509 Gene

Summaries for LINC02509 Gene

GeneCards Summary for LINC02509 Gene

LINC02509 (Long Intergenic Non-Protein Coding RNA 2509) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02509 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02509 Gene

Genomics for LINC02509 Gene

GeneHancer (GH) Regulatory Elements for LINC02509 Gene

Promoters and enhancers for LINC02509 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J176875 Enhancer 0.4 Ensembl ENCODE 512.3 -0.3 -261 0.8 REST LINC02509 ENSG00000249458 piR-50444-356 ENSG00000287544
GH04J176901 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 11.3 +27.4 27389 2.3 FOS EP300 BCL11A CBFB MEF2B EZH2 BATF JUND IKZF1 BMI1 LINC02509 HSALNG0038728 ENSG00000287544
GH04J176882 Enhancer 0.9 ENCODE dbSUPER 12.1 +8.2 8246 3.3 TCF12 ZNF639 REST OSR2 WT1 ZBTB17 TCF7L2 FOSL2 KLF8 EZH2 LINC02509 HSALNG0038728 ENSG00000287544
GH04J176920 Enhancer 0.9 FANTOM5 Ensembl dbSUPER 11 +45.2 45213 1.8 JUND FOS GATA2 JUN POLR2A TAF1 CEBPB STAT3 HSALNG0038728 LINC02509 ENSG00000287544
GH04J176906 Enhancer 0.5 Ensembl dbSUPER 11.2 +31.2 31213 0.2 PKNOX1 ZNF629 LINC02509 HSALNG0038728 ENSG00000287544
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02509 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02509 Gene

Genomic Locations for LINC02509 Gene
chr4:176,875,688-176,908,072
(GRCh38/hg38)
Size:
32,385 bases
Orientation:
Plus strand
chr4:177,796,856-177,801,759
(GRCh37/hg19)
Size:
4,904 bases
Orientation:
Plus strand

Genomic View for LINC02509 Gene

Genes around LINC02509 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02509 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02509 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02509 Gene

Proteins for LINC02509 Gene

Post-translational modifications for LINC02509 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02509 Gene

Domains & Families for LINC02509 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02509 Gene

Function for LINC02509 Gene

Phenotypes From GWAS Catalog for LINC02509 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02509 Gene

Localization for LINC02509 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02509 Gene

Pathways & Interactions for LINC02509 Gene

PathCards logo

SuperPathways for LINC02509 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02509 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02509 Gene

Drugs & Compounds for LINC02509 Gene

No Compound Related Data Available

Transcripts for LINC02509 Gene

mRNA/cDNA for LINC02509 Gene

8 RNACentral transcripts :
1 REFSEQ mRNAs :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
4 LncBook transcripts :
2 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02509 Gene

No ASD Table

Relevant External Links for LINC02509 Gene

GeneLoc Exon Structure for
LINC02509

Expression for LINC02509 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02509

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02509 Gene

Orthologs for LINC02509 Gene

Evolution for LINC02509 Gene

ENSEMBL:
Gene Tree for LINC02509 (if available)
TreeFam:
Gene Tree for LINC02509 (if available)

No data available for Orthologs for LINC02509 Gene

Paralogs for LINC02509 Gene

No data available for Paralogs for LINC02509 Gene

Variants for LINC02509 Gene

Additional dbSNP identifiers (rs#s) for LINC02509 Gene

Additional Variant Information for LINC02509 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02509

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02509 Gene

Disorders for LINC02509 Gene

Additional Disease Information for LINC02509

No disorders were found for LINC02509 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02509 Gene

Publications for LINC02509 Gene

No publications were found for LINC02509 Gene.

No data available for Mastermind for LINC02509 Gene

Products for LINC02509 Gene

Sources for LINC02509 Gene