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Aliases for LINC02499 Gene

Subcategory (RNA class) for LINC02499 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC02499 Gene

  • Long Intergenic Non-Protein Coding RNA 2499 2 3 5
  • HCG1813624 3

External Ids for LINC02499 Gene

Summaries for LINC02499 Gene

GeneCards Summary for LINC02499 Gene

LINC02499 (Long Intergenic Non-Protein Coding RNA 2499) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02499 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02499 Gene

Genomics for LINC02499 Gene

GeneHancer (GH) Regulatory Elements for LINC02499 Gene

Promoters and enhancers for LINC02499 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I073520 Enhancer 0.7 ENCODE 0.4 +12.1 12091 0.9 BACH1 EBF1 ZNF398 FEZF1 ZEB2 ZBTB8A BATF ZIC2 GLIS2 ZNF366 AFP LINC02499 ENSG00000249970
GH04I073533 Enhancer 0.9 ENCODE 0.3 +26.4 26428 3.8 FOXA2 FEZF1 ZNF2 IRF4 RUNX3 JUNB TSHZ1 GLIS1 HNF4A PRDM4 CXCL8 ENSG00000249970 LINC02499
GH04I073481 Promoter 0.9 EPDnew 0.3 -27.1 -27077 0.1 FOXA2 TAF1 REST RAD21 JUND HNF1A ATF3 HNF4G ZBTB33 HNF4A AFM LINC02499
GH04I073527 Enhancer 0.2 FANTOM5 0.4 +19.0 19018 0 AFM ALB ENSG00000249970 LINC02499
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC02499 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02499 Gene

Genomic Locations for LINC02499 Gene
chr4:73,508,803-73,534,128
(GRCh38/hg38)
Size:
25,326 bases
Orientation:
Plus strand
chr4:74,374,520-74,399,845
(GRCh37/hg19)

Genomic View for LINC02499 Gene

Genes around LINC02499 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02499 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02499 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02499 Gene

Proteins for LINC02499 Gene

Post-translational modifications for LINC02499 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02499 Gene

Domains & Families for LINC02499 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02499 Gene

Function for LINC02499 Gene

Phenotypes for LINC02499 Gene

GenomeRNAi human phenotypes for LINC02499:
genes like me logo Genes that share phenotypes with LINC02499: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02499 Gene

Localization for LINC02499 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02499 Gene

Pathways & Interactions for LINC02499 Gene

SuperPathways for LINC02499 Gene

No Data Available

Interacting Proteins for LINC02499 Gene

Gene Ontology (GO) - Biological Process for LINC02499 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02499 Gene

Drugs & Compounds for LINC02499 Gene

No Compound Related Data Available

Transcripts for LINC02499 Gene

mRNA/cDNA for LINC02499 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02499 Gene

No ASD Table

Relevant External Links for LINC02499 Gene

GeneLoc Exon Structure for
LINC02499
ECgene alternative splicing isoforms for
LINC02499

Expression for LINC02499 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02499 Gene

Orthologs for LINC02499 Gene

Evolution for LINC02499 Gene

ENSEMBL:
Gene Tree for LINC02499 (if available)
TreeFam:
Gene Tree for LINC02499 (if available)

No data available for Orthologs for LINC02499 Gene

Paralogs for LINC02499 Gene

No data available for Paralogs for LINC02499 Gene

Variants for LINC02499 Gene

Sequence variations from dbSNP and Humsavar for LINC02499 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000046599 -- 73,522,327(+) G/A intron_variant
rs1000139683 -- 73,522,646(+) G/C intron_variant
rs1000221523 -- 73,514,995(+) G/A intron_variant
rs1000254080 -- 73,515,419(+) T/G intron_variant
rs1000347410 -- 73,526,354(+) G/C intron_variant

Additional Variant Information for LINC02499 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02499

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02499 Gene

Disorders for LINC02499 Gene

Additional Disease Information for LINC02499

No disorders were found for LINC02499 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02499 Gene

Publications for LINC02499 Gene

  1. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. (PMID: 23535732) Eeles RA … Easton DF (Nature genetics 2013) 3 58
  2. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58

Products for LINC02499 Gene

Sources for LINC02499 Gene

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