Aliases for LINC02498 Gene

Subcategory (RNA class) for LINC02498 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02498 Gene

  • Long Intergenic Non-Protein Coding RNA 2498 2 3 5
  • LINC02498 2 5 165
  • NONHSAG037493.2 91
  • HSALNG0032897 164

External Ids for LINC02498 Gene

Previous GeneCards Identifiers for LINC02498 Gene

  • GC04P012643
  • GC04P012807
  • GC04P012829
  • GC04P013181
  • GC04P011832
  • GC04P011996
  • GC04P012154
  • GC04P012318
  • GC04P012477

Summaries for LINC02498 Gene

GeneCards Summary for LINC02498 Gene

LINC02498 (Long Intergenic Non-Protein Coding RNA 2498) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02498 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02498 Gene

Genomics for LINC02498 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02498 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J010737 Promoter 0.6 EPDnew 600.7 +0.0 14 0.1 RFX1 BMI1 NR2F1 LINC02498 CLNK lnc-DRD5-7 HS3ST1
GH04J010734 Promoter 0.7 EPDnew 0.7 -2.7 -2698 0.1 TCF12 IKZF2 RFX1 IKZF1 TBX21 MTA2 BHLHE40 EGR1 RAD51 CLNK LINC02498 HS3ST1
GH04J010742 Enhancer 1 Ensembl ENCODE 0.4 +5.4 5350 2.2 STAT3 RELA IKZF2 RCOR1 TRIM22 EED YBX1 ARID3A DPF2 RELB HS3ST1 CLNK LINC02498 lnc-DRD5-7
GH04J010746 Enhancer 0.9 Ensembl ENCODE 0.4 +9.2 9247 1.5 STAT3 IKZF2 RCOR1 RELA DPF2 RELB RUNX3 GATAD2B BCLAF1 TCF12 HS3ST1 LINC02498 CLNK lnc-DRD5-7
GH04J010761 Enhancer 0.6 Ensembl ENCODE 0.4 +24.9 24943 2 PRDM10 ZBTB44 BHLHE40 GLIS1 TRIM28 lnc-DRD5-7 piR-39858-465 LINC02498 CLNK HS3ST1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02498 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02498 Gene

Genomic Locations for LINC02498 Gene
chr4:10,737,558-10,808,910
(GRCh38/hg38)
Size:
71,353 bases
Orientation:
Plus strand

Genomic View for LINC02498 Gene

Genes around LINC02498 on UCSC Golden Path with GeneCards custom track
LINC02498 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02498 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02498 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02498 Gene

Proteins for LINC02498 Gene

Post-translational modifications for LINC02498 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02498 Gene

Domains & Families for LINC02498 Gene

Gene Families for LINC02498 Gene

genes like me logo Genes that share domains with LINC02498: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02498 Gene

Function for LINC02498 Gene

Phenotypes From GWAS Catalog for LINC02498 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02498 Gene

Localization for LINC02498 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02498 Gene

Pathways & Interactions for LINC02498 Gene

PathCards logo

SuperPathways for LINC02498 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02498 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02498 Gene

Drugs & Compounds for LINC02498 Gene

No Compound Related Data Available

Transcripts for LINC02498 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02498 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000EF5977_9606 lncRNA 1079 2

HGNC: 53483,

Ensembl: ENST00000635390 (view in UCSC) ,

URS00008B6345_9606 lncRNA 815 3

LncBook: HSALNT0069101,

LNCipedia: LINC02498:10,

NONCODE: NONHSAT095510.2,

URS00008B8156_9606 lncRNA 574 3

LncBook: HSALNT0069108,

LNCipedia: LINC02498:13,

NONCODE: NONHSAT095513.2,

URS00008B7196_9606 lncRNA 564 3

LncBook: HSALNT0069105,

LNCipedia: LINC02498:12,

NONCODE: NONHSAT095512.2,

URS00009B0D39_9606 lncRNA 1341 2

LncBook: HSALNT0069104,

NONCODE: NONHSAT198275.1,

LINC02498 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02498 Gene

No ASD Table

Relevant External Links for LINC02498 Gene

GeneLoc Exon Structure for
LINC02498

No data available for mRNA/cDNA for LINC02498 Gene

Expression for LINC02498 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02498 Gene

Orthologs for LINC02498 Gene

Evolution for LINC02498 Gene

ENSEMBL:
Gene Tree for LINC02498 (if available)
TreeFam:
Gene Tree for LINC02498 (if available)

No data available for Orthologs for LINC02498 Gene

Paralogs for LINC02498 Gene

No data available for Paralogs for LINC02498 Gene

Variants for LINC02498 Gene

Additional dbSNP identifiers (rs#s) for LINC02498 Gene

Additional Variant Information for LINC02498 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02498

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02498 Gene

Disorders for LINC02498 Gene

No disorders were found for LINC02498 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02498 Gene

Publications for LINC02498 Gene

No publications were found for LINC02498 Gene.

No data available for Mastermind for LINC02498 Gene

Products for LINC02498 Gene

Sources for LINC02498 Gene