Aliases for LINC02498 Gene
Subcategory (RNA class) for LINC02498 Gene
non-coding RNA
Quality Score for this RNA gene is
13
External Ids for LINC02498 Gene
- HGNC: 53483
- Entrez Gene: 102723525
- Ensembl: ENSG00000283083
Previous GeneCards Identifiers for LINC02498 Gene
- GC04P012643
- GC04P011832
- GC04P011996
- GC04P012154
- GC04P012318
- GC04P012477
Summaries for LINC02498 Gene
GeneCards Summary for LINC02498 Gene
LINC02498 (Long Intergenic Non-Protein Coding RNA 2498) is an RNA Gene, and is affiliated with the non-coding RNA class.
Additional gene information for LINC02498 Gene
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02498 Gene
Genomics for LINC02498 Gene
GeneHancer (GH) Regulatory Elements for LINC02498 Gene
Promoters and enhancers for LINC02498 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH04J010737 | Enhancer | 0.4 | Ensembl | 600.7 | +0.1 | 128 | 0.2 | RFX1 BMI1 NR2F1 | LINC02498 LOC105374479 | |
| GH04J010742 | Enhancer | 1 | Ensembl ENCODE | 0.7 | +4.9 | 4929 | 3.4 | ZNF687 RELA CREM MLLT1 ZBED1 IKZF1 IKZF2 TRIM22 CBFB YBX1 | HS3ST1 LINC02498 LOC105374479 | |
| GH04J010734 | Promoter | 0.7 | EPDnew | 0.7 | -2.7 | -2712 | 0.1 | IKZF1 IKZF2 RFX1 | CLNK LINC02498 | |
| GH04J010746 | Enhancer | 0.7 | ENCODE | 0.4 | +9.2 | 9233 | 1.5 | ZNF687 MLLT1 IKZF1 IKZF2 RELA DPF2 RUNX3 BCLAF1 BCL11A NBN | HS3ST1 LINC02498 LOC105374479 | |
| GH04J010761 | Enhancer | 0.6 | Ensembl ENCODE | 0.3 | +24.9 | 24929 | 2 | PRDM10 ZBTB44 GLIS1 | LINC02498 LOC105374479 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC02498 on UCSC Golden Path with GeneCards custom track
Genomic Locations for LINC02498 Gene
Genomic Locations for LINC02498 Gene
- chr4:10,737,572-10,808,919
- (GRCh38/hg38)
- Size:
- 71,348 bases
- Orientation:
- Plus strand
Genomic View for LINC02498 Gene
Genes around LINC02498 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 4p16.1 by HGNC
- 4p16.1 by Entrez Gene
- 4p16.1 by Ensembl
LINC02498 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC02498 Gene
Proteins for LINC02498 Gene
Post-translational modifications for LINC02498 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC02498
- Origene Custom Protein Services for LINC02498
No data available for DME Specific Peptides for LINC02498 Gene
Domains & Families for LINC02498 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02498 Gene
Function for LINC02498 Gene
Phenotypes From GWAS Catalog for LINC02498 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for LINC02498
-
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02498 Gene
Localization for LINC02498 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02498 Gene
Transcripts for LINC02498 Gene
mRNA/cDNA for LINC02498 Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000635390 1065 bps (ENST00000635390.1)
- (1) RNA Central transcripts :
CRISPR Products
- Browse CRISPR knockouts for LINC02498
miRNA Products
Inhibitory RNA Products
Clone Products
Expression for LINC02498 Gene
No Expression Related Data Available
Primer Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02498 Gene
Orthologs for LINC02498 Gene
No data available for Orthologs for LINC02498 Gene
Paralogs for LINC02498 Gene
No data available for Paralogs for LINC02498 Gene
Variants for LINC02498 Gene
| SNP ID | Clin | Chr 04 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000008701 | -- | 10,780,784(+) | A/C | genic_downstream_transcript_variant, intron_variant | |
| rs1000042655 | -- | 10,738,750(+) | A/G | intron_variant | |
| rs1000057191 | -- | 10,792,605(+) | A/T | genic_downstream_transcript_variant, intron_variant | |
| rs1000080204 | -- | 10,780,970(+) | A/C | genic_downstream_transcript_variant, intron_variant | |
| rs1000168396 | -- | 10,782,793(+) | G/A/T | genic_downstream_transcript_variant, intron_variant |
Additional Variant Information for LINC02498 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC02498
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02498 Gene
Disorders for LINC02498 Gene
No disorders were found for LINC02498 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02498 Gene
Publications for LINC02498 Gene
No publications were found for LINC02498 Gene.
No data available for External Links for LINC02498 Gene
Products for LINC02498 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC02498
- Origene Custom Protein Services for LINC02498
- Browse OriGene Inhibitory RNA Products For LINC02498
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC02498
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC02498
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Cyagen custom Knockout/knockin (KOKI) mouse models for LINC02498
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC02498
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC02498
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC02498
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC02498
Sources for LINC02498 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) UniGene
- (28) AceView
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) HGMD
- (45) GAD
- (46) BGMUT
- (47) HuGE
- (48) Atlas
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) OCA
- (69) Proteopedia
- (70) MOPED
- (71) neXtProt
- (72) Reactome
- (73) GeneGo (Thomson Reuters)
- (74) fRNAdb
- (75) DISEASES
- (76) SIMAP
- (77) GenomeRNAi
- (78) LifeMap
- (79) miRTarBase
- (80) MalaCards
- (81) Invitrogen
- (82) BitterDB
- (83) ESI-BIO
- (84) RefSeq
- (85) BioSystems
- (86) MaxQB
- (87) IUPHAR
- (88) BioGPS
- (89) Illumina
- (90) COMPARTMENTS
- (91) HOMER
- (92) PaxDb
- (93) ApexBio
- (94) Addgene
- (95) antibodies-online
- (96) CYP
- (97) NONCODE
- (98) SwitchGear Genomics
- (99) TreeFam
- (100) PathCards
- (101) GeneReviews
- (102) GeneTex
- (103) Taconic Biosciences
- (104) GTEx
- (105) ProteomicsDB
- (106) SCBT
- (107) DGIdb
- (108) ClinicalTrials
- (109) FDA Approved Drugs
- (110) RVIS
- (111) SIGNOR
- (112) diseasecard
- (113) NIH Rare Diseases
- (114) Orphanet
- (115) UMLS
- (116) GTR
- (117) Disease Ontology
- (118) Genetics Home Reference
- (119) MeSH
- (120) MedlinePlus
- (121) CDC
- (122) NINDS
- (123) NCBI Bookshelf
- (124) ClinVar
- (125) Gene Damage Index
- (126) ViGene Biosciences
- (127) HPO
- (128) UDN
- (129) VISTA
- (130) FANTOM5
- (131) ENCODE
- (132) ProSci
- (133) Horizon
- (134) NURSA
- (135) IID
- (136) Cyagen
- (137) VectorBuilder
- (138) SNPedia
- (139) BRCA Exchange
- (140) St John's Lab
- (141) CIViC
- (142) ProteoGenix
- (143) dbSUPER
- (144) TISSUES
- (145) Gene ORGANizer
- (146) abm
- (147) CrownBio
- (148) Human Protein Atlas
- (149) GWAS Catalog
- (150) Monarch Initiative
- (151) DataMed
- (152) HumanCyc
- (153) genomics-online
- (154) UCNEbase
- (155) EPDnew
- (156) Applied Biosystems
- (157) GlyConnect
- (158) Aminode
- (159) GeneCopoeia
- (160) GPS-Prot
- (161) RNACentral
- (162) LncRNADisease
- (163) LOVD
- (164) miR2Disease
- (165) DiseaseEnhancer
- (166) Boster Bio
- (167) Biorbyt
- (168) Biocompare
- (169) Mastermind