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Aliases for LINC02498 Gene

Subcategory (RNA class) for LINC02498 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02498 Gene

  • Long Intergenic Non-Protein Coding RNA 2498 2 3 5

External Ids for LINC02498 Gene

Previous GeneCards Identifiers for LINC02498 Gene

  • GC04P012643
  • GC04P011832
  • GC04P011996
  • GC04P012154
  • GC04P012318
  • GC04P012477

Summaries for LINC02498 Gene

GeneCards Summary for LINC02498 Gene

LINC02498 (Long Intergenic Non-Protein Coding RNA 2498) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02498 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02498 Gene

Genomics for LINC02498 Gene

GeneHancer (GH) Regulatory Elements for LINC02498 Gene

Promoters and enhancers for LINC02498 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J010737 Enhancer 0.4 Ensembl 600.7 +0.1 128 0.2 RFX1 BMI1 NR2F1 LINC02498 LOC105374479
GH04J010742 Enhancer 1 Ensembl ENCODE 0.7 +4.9 4929 3.4 ZNF687 RELA CREM MLLT1 ZBED1 IKZF1 IKZF2 TRIM22 CBFB YBX1 HS3ST1 LINC02498 LOC105374479
GH04J010734 Promoter 0.7 EPDnew 0.7 -2.7 -2712 0.1 IKZF1 IKZF2 RFX1 CLNK LINC02498
GH04J010746 Enhancer 0.7 ENCODE 0.4 +9.2 9233 1.5 ZNF687 MLLT1 IKZF1 IKZF2 RELA DPF2 RUNX3 BCLAF1 BCL11A NBN HS3ST1 LINC02498 LOC105374479
GH04J010761 Enhancer 0.6 Ensembl ENCODE 0.3 +24.9 24929 2 PRDM10 ZBTB44 GLIS1 LINC02498 LOC105374479
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02498 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02498 Gene

Genomic Locations for LINC02498 Gene
chr4:10,737,572-10,808,919
(GRCh38/hg38)
Size:
71,348 bases
Orientation:
Plus strand

Genomic View for LINC02498 Gene

Genes around LINC02498 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02498 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02498 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02498 Gene

Proteins for LINC02498 Gene

Post-translational modifications for LINC02498 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02498 Gene

Domains & Families for LINC02498 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02498 Gene

Function for LINC02498 Gene

Phenotypes From GWAS Catalog for LINC02498 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02498 Gene

Localization for LINC02498 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02498 Gene

Pathways & Interactions for LINC02498 Gene

PathCards logo

SuperPathways for LINC02498 Gene

No Data Available

Interacting Proteins for LINC02498 Gene

Gene Ontology (GO) - Biological Process for LINC02498 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02498 Gene

Drugs & Compounds for LINC02498 Gene

No Compound Related Data Available

Transcripts for LINC02498 Gene

mRNA/cDNA for LINC02498 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02498 Gene

No ASD Table

Relevant External Links for LINC02498 Gene

GeneLoc Exon Structure for
LINC02498
ECgene alternative splicing isoforms for
LINC02498

Expression for LINC02498 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02498 Gene

Orthologs for LINC02498 Gene

Evolution for LINC02498 Gene

ENSEMBL:
Gene Tree for LINC02498 (if available)
TreeFam:
Gene Tree for LINC02498 (if available)

No data available for Orthologs for LINC02498 Gene

Paralogs for LINC02498 Gene

No data available for Paralogs for LINC02498 Gene

Variants for LINC02498 Gene

Sequence variations from dbSNP and Humsavar for LINC02498 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000008701 -- 10,780,784(+) A/C genic_downstream_transcript_variant, intron_variant
rs1000042655 -- 10,738,750(+) A/G intron_variant
rs1000057191 -- 10,792,605(+) A/T genic_downstream_transcript_variant, intron_variant
rs1000080204 -- 10,780,970(+) A/C genic_downstream_transcript_variant, intron_variant
rs1000168396 -- 10,782,793(+) G/A/T genic_downstream_transcript_variant, intron_variant

Additional Variant Information for LINC02498 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02498

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02498 Gene

Disorders for LINC02498 Gene

No disorders were found for LINC02498 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02498 Gene

Publications for LINC02498 Gene

No publications were found for LINC02498 Gene.

No data available for External Links for LINC02498 Gene

Products for LINC02498 Gene

Sources for LINC02498 Gene

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