Aliases for LINC02483 Gene

Subcategory (RNA class) for LINC02483 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02483 Gene

  • Long Intergenic Non-Protein Coding RNA 2483 2 3 5
  • LINC02483 2 5 165
  • NONHSAG038219.2 91
  • HSALNG0035248 164

External Ids for LINC02483 Gene

Summaries for LINC02483 Gene

GeneCards Summary for LINC02483 Gene

LINC02483 (Long Intergenic Non-Protein Coding RNA 2483) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02483 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02483 Gene

Genomics for LINC02483 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02483 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J075327 Enhancer 0.3 Ensembl 6.1 -26.3 -26275 0.8 NR2F2 LINC02483 piR-54764-491 ENSG00000251185 THAP6 PARM1
GH04J075324 Enhancer 0.2 Ensembl 6.1 -28.7 -28675 1.2 LINC02483 PARM1 piR-54764-491 ENSG00000251185 THAP6
GH04J075342 Enhancer 0.8 Ensembl ENCODE 0.4 -9.7 -9661 3.2 PRDM10 ZNF629 SCRT2 ZEB1 BCL11A FOS SCRT1 KLF13 KLF8 HIC1 PARM1 FAM47E LINC02483 ENSG00000251454 ENSG00000251185 piR-54764-491 THAP6
GH04J075328 Enhancer 0.3 Ensembl 0.3 -25.6 -25570 0.6 NR2F2 piR-54764-491 LINC02483 ENSG00000251185 THAP6 PARM1
GH04J075330 Enhancer 0.2 Ensembl 0.4 -23.4 -23375 0.2 piR-54764-491 LINC02483 ENSG00000251185 THAP6 PARM1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02483 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02483 Gene

Genomic Locations for LINC02483 Gene
chr4:75,354,076-75,362,566
(GRCh38/hg38)
Size:
8,491 bases
Orientation:
Plus strand
chr4:76,279,286-76,287,776
(GRCh37/hg19)
Size:
8,491 bases
Orientation:
Plus strand

Genomic View for LINC02483 Gene

Genes around LINC02483 on UCSC Golden Path with GeneCards custom track
LINC02483 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02483 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02483 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02483 Gene

Proteins for LINC02483 Gene

Post-translational modifications for LINC02483 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02483 Gene

Domains & Families for LINC02483 Gene

Gene Families for LINC02483 Gene

genes like me logo Genes that share domains with LINC02483: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02483 Gene

Function for LINC02483 Gene

Phenotypes From GWAS Catalog for LINC02483 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02483 Gene

Localization for LINC02483 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02483 Gene

Pathways & Interactions for LINC02483 Gene

PathCards logo

SuperPathways for LINC02483 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02483 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02483 Gene

Drugs & Compounds for LINC02483 Gene

No Compound Related Data Available

Transcripts for LINC02483 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02483 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000532D77_9606 lncRNA 1143 4

Ensembl: ENST00000512043 (view in UCSC) ,

LncBook: HSALNT0073820,

LNCipedia: LINC02483:6,

NONCODE: NONHSAT096917.2,

URS000075B9AE_9606 lncRNA 1143 2

HGNC: 53457,

RefSeq: NR_033964,

URS00008B4E6F_9606 lncRNA 422 3

LncBook: HSALNT0073821,

LNCipedia: LINC02483:7,

NONCODE: NONHSAT096918.2,

URS00008BA12B_9606 lncRNA 1141 1

LNCipedia: LINC02483:5,

LINC02483 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02483 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02483 Gene

No ASD Table

Relevant External Links for LINC02483 Gene

GeneLoc Exon Structure for
LINC02483

Expression for LINC02483 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02483

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02483 Gene

Orthologs for LINC02483 Gene

Evolution for LINC02483 Gene

ENSEMBL:
Gene Tree for LINC02483 (if available)
TreeFam:
Gene Tree for LINC02483 (if available)

No data available for Orthologs for LINC02483 Gene

Paralogs for LINC02483 Gene

No data available for Paralogs for LINC02483 Gene

Variants for LINC02483 Gene

Additional dbSNP identifiers (rs#s) for LINC02483 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02483 Gene

Variant ID Type Subtype PubMed ID
esv2763368 CNV gain 21179565
esv3601027 CNV gain 21293372
nsv461557 CNV loss 19166990
nsv594687 CNV loss 21841781
nsv594688 CNV loss 21841781
nsv7363 OTHER inversion 18451855
nsv998511 CNV gain 25217958

Additional Variant Information for LINC02483 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02483

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02483 Gene

Disorders for LINC02483 Gene

Additional Disease Information for LINC02483

No disorders were found for LINC02483 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02483 Gene

Publications for LINC02483 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC02483 Gene

Products for LINC02483 Gene

Sources for LINC02483 Gene