Aliases for LINC02478 Gene

Subcategory (RNA class) for LINC02478 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC02478 Gene

  • Long Intergenic Non-Protein Coding RNA 2478 2 3 5
  • LINC02478 2 170
  • NONHSAG029651 94
  • HSALNG0019953 169

External Ids for LINC02478 Gene

Previous GeneCards Identifiers for LINC02478 Gene

  • GC02M160258
  • GC02M160100

Summaries for LINC02478 Gene

GeneCards Summary for LINC02478 Gene

LINC02478 (Long Intergenic Non-Protein Coding RNA 2478) is an RNA Gene, and is affiliated with the lncRNA class. Among its related pathways are Elastic fibre formation and Arrhythmogenic right ventricular cardiomyopathy (ARVC).

Additional gene information for LINC02478 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02478 Gene

Genomics for LINC02478 Gene

GeneHancer (GH) Regulatory Elements for LINC02478 Gene

Promoters and enhancers for LINC02478 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J160268 Promoter/Enhancer 2 Ensembl ENCODE CraniofacialAtlas dbSUPER 750.6 +1.7 1677 3.4 CTCF ZBTB6 MLX POLR2A USF2 NR2F1 NR2F6 L3MBTL2 RAD21 MNT ENSG00000285155 LINC02478 ITGB6 BAZ2B PLA2R1 piR-35729-033
GH02J160272 Enhancer 0.5 UCNEbase dbSUPER 750.6 -0.2 -196 0.2 ENSG00000285155 LINC02478 lnc-ITGB6-2 RBMS1
GH02J160251 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE dbSUPER 0.4 +19.0 19031 3.5 SIN3A CTCF RAD21 SP1 TRIM22 REST ATF3 ZBTB20 SMARCA5 SMC3 ITGB6 piR-38419 LINC02478 ENSG00000285155 lnc-MARCH7-5
GH02J160238 Enhancer 1.5 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 +29.9 29891 4.8 POLR2A MNT NFIB SP7 FOSL2 PRDM10 SMARCC1 CTBP1 CEBPB REST ITGB6 RBMS1 piR-38419 ENSG00000285155 LINC02478 lnc-MARCH7-5
GH02J160219 Enhancer 1.7 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.2 +47.0 47007 11.8 SIN3A GATA3 RBPJ POLR2A TCF7L2 ZNF217 JUND ETV6 RELA NFIB ITGB6 LY75 PLA2R1 RBMS1 CD302 lnc-MARCH7-5 piR-38419 ENSG00000285155 LINC02478
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02478 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02478 Gene

Genomic Locations for LINC02478 Gene
chr2:160,141,981-160,272,108
(GRCh38/hg38)
Size:
130,128 bases
Orientation:
Minus strand

Genomic View for LINC02478 Gene

Genes around LINC02478 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02478 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02478 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02478 Gene

Proteins for LINC02478 Gene

Post-translational modifications for LINC02478 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02478 Gene

Domains & Families for LINC02478 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02478 Gene

Function for LINC02478 Gene

Phenotypes From GWAS Catalog for LINC02478 Gene

Phenotypes for LINC02478 Gene

genes like me logo Genes that share phenotypes with LINC02478: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02478 Gene

Localization for LINC02478 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02478 Gene

Pathways & Interactions for LINC02478 Gene

genes like me logo Genes that share pathways with LINC02478: view

Gene Ontology (GO) - Biological Process for LINC02478 Gene

None

No data available for SIGNOR curated interactions for LINC02478 Gene

Drugs & Compounds for LINC02478 Gene

No Compound Related Data Available

Transcripts for LINC02478 Gene

mRNA/cDNA for LINC02478 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(10) RNACentral transcripts :
(9) LNCipedia transcripts :
(2) LncBook transcripts :
(2) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02478 Gene

No ASD Table

Relevant External Links for LINC02478 Gene

GeneLoc Exon Structure for
LINC02478
ECgene alternative splicing isoforms for
LINC02478

Expression for LINC02478 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02478 Gene

Orthologs for LINC02478 Gene

Evolution for LINC02478 Gene

ENSEMBL:
Gene Tree for LINC02478 (if available)
TreeFam:
Gene Tree for LINC02478 (if available)

No data available for Orthologs for LINC02478 Gene

Paralogs for LINC02478 Gene

No data available for Paralogs for LINC02478 Gene

Variants for LINC02478 Gene

Sequence variations from dbSNP and Humsavar for LINC02478 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000138390 -- 160,261,321(-) T/A intron_variant
rs1000200453 -- 160,257,577(-) C/G/T downstream_transcript_variant
rs1000208282 -- 160,267,805(-) G/A/T intron_variant
rs1000239264 -- 160,268,048(-) G/T intron_variant
rs1000257166 -- 160,264,922(-) G/GG intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC02478 Gene

Variant ID Type Subtype PubMed ID
esv28901 CNV gain 19812545

Additional Variant Information for LINC02478 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02478

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC02478 Gene

Disorders for LINC02478 Gene

Additional Disease Information for LINC02478

No disorders were found for LINC02478 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02478 Gene

Publications for LINC02478 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 56

No data available for External Links for LINC02478 Gene

Products for LINC02478 Gene

Sources for LINC02478 Gene