Aliases for LINC02478 Gene

Data sources for LINC02478 Gene:

RNA type for LINC02478 Gene

lncRNA

Aliases for LINC02478 Gene

External Ids for LINC02478 Gene

Previous GeneCards Identifiers for LINC02478 Gene

  • GC02M160142
  • GC02M160100

Summaries for LINC02478 Gene

GeneCards Summary for LINC02478 Gene

LINC02478 (Long Intergenic Non-Protein Coding RNA 2478) is an RNA Gene, and is affiliated with the lncRNA class. Among its related pathways are Degradation of the extracellular matrix and Arrhythmogenic right ventricular cardiomyopathy.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02478 Gene

Genomics for LINC02478 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02478 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J160268 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 +1.5 1464 3.4 IKZF1 ZNF600 SSRP1 ATF2 POLR2A ZIC2 YY1 CHD2 BHLHE40 FEZF1 ENSG00000285155 LINC02478 ITGB6 MARCHF7 BAZ2B ENSG00000226266 WDSUB1 PLA2R1 piR-35729-033 RBMS1
GH02J160272 Enhancer 0.5 UCNEbase dbSUPER 250.7 -0.4 -409 0.2 ENSG00000285155 LINC02478 lnc-ITGB6-2 ITGB6 RBMS1
GH02J160278 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -7.5 -7465 2.9 JUND ZEB1 CTCF RFX5 ZNF585B RAD21 MAFK ZNF398 CREB1 GABPB1 ITGB6 WDSUB1 PLA2R1 BAZ2B RPS3AP13 LINC02478 lnc-ITGB6-2 RBMS1
GH02J160256 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +14.2 14194 2.6 CEBPB EP300 CTBP1 RAD21 RFX5 SMC3 YY1 TBP TCF7L2 SMARCE1 ITGB6 piR-38419 ENSG00000285155 LINC02478 lnc-MARCH7-5 RBMS1
GH02J160281 Enhancer 0.7 Ensembl dbSUPER 0.4 -10.6 -10605 1.8 FOXA2 CREM FOXP1 SOX5 SPI1 ZNF664 HLF GATAD2A TCF7 ITGB6 lnc-ITGB6-2 LINC02478 RBMS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02478 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02478 Gene

Latest Assembly
chr2:160,257,717-160,271,895
(GRCh38/hg38)
Size:
14,179 bases
Orientation:
Minus strand

Previous Assembly
chr2:161,114,230-161,128,406
(GRCh37/hg19 by Entrez Gene)
Size:
14,177 bases
Orientation:
Minus strand

Genomic View for LINC02478 Gene

Genes around LINC02478 on UCSC Golden Path with GeneCards custom track
LINC02478 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02478 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02478 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02478 Gene

Proteins for LINC02478 Gene

Post-translational modifications for LINC02478 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02478 Gene

Domains & Families for LINC02478 Gene

Gene Families for LINC02478 Gene

genes like me logo Genes that share domains with LINC02478: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02478 Gene

Function for LINC02478 Gene

Phenotypes From GWAS Catalog for LINC02478 Gene

Phenotypes for LINC02478 Gene

genes like me logo Genes that share phenotypes with LINC02478: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02478 Gene

Localization for LINC02478 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02478 Gene

Pathways & Interactions for LINC02478 Gene

genes like me logo Genes that share pathways with LINC02478: view

Gene Ontology (GO) - Biological Process for LINC02478 Gene

None

No data available for Interacting Proteins and SIGNOR curated interactions for LINC02478 Gene

Drugs & Compounds for LINC02478 Gene

No Compound Related Data Available

Transcripts for LINC02478 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02478 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000D6393C_9606 lncRNA 490 2

Ensembl: ENST00000459712 (view in UCSC) ,

LNCipedia: LINC02478:5,

URS0000D64BC4_9606 lncRNA 333 2

Ensembl: ENST00000477514 (view in UCSC) ,

LNCipedia: LINC02478:7,

URS0000EED76E_9606 lncRNA 517 1

Ensembl: ENST00000664835 (view in UCSC) ,

URS0000EF0704_9606 lncRNA 516 1

Ensembl: ENST00000655410 (view in UCSC) ,

URS000075E363_9606 lncRNA 504 1

RefSeq: NR_103775,

LINC02478 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02478 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02478 Gene

No ASD Table

Relevant External Links for LINC02478 Gene

GeneLoc Exon Structure for
LINC02478

Expression for LINC02478 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02478 Gene

Orthologs for LINC02478 Gene

Evolution for LINC02478 Gene

ENSEMBL:
Gene Tree for LINC02478 (if available)
TreeFam:
Gene Tree for LINC02478 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC02478

No data available for Orthologs for LINC02478 Gene

Paralogs for LINC02478 Gene

No data available for Paralogs for LINC02478 Gene

Variants for LINC02478 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02478 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC02478 Gene

Variant ID Type Subtype PubMed ID
esv28901 CNV gain 19812545

Additional Variant Information for LINC02478 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02478
Leiden Open Variation Database (LOVD)
LINC02478

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02478 Gene

Disorders for LINC02478 Gene

Additional Disease Information for LINC02478

No disorders were found for LINC02478 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02478 Gene

Publications for LINC02478 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3

No data available for Mastermind for LINC02478 Gene

Products for LINC02478 Gene

Sources for LINC02478 Gene