Aliases for LINC02477 Gene

Data sources for LINC02477 Gene:

Subcategory (RNA class) for LINC02477 Gene

lncRNA

Aliases for LINC02477 Gene

External Ids for LINC02477 Gene

Previous GeneCards Identifiers for LINC02477 Gene

  • GC04P160519

Summaries for LINC02477 Gene

GeneCards Summary for LINC02477 Gene

LINC02477 (Long Intergenic Non-Protein Coding RNA 2477) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02477 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02477 Gene

Genomics for LINC02477 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02477 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J159685 Enhancer 0.3 Ensembl 13.6 -571.6 -571627 1.2 EP300 LINC02477 piR-37611-009 HSALNG0038215 LINC02233 LOC107986324 HSALNG0038202 RAPGEF2
GH04J159698 Enhancer 0.3 ENCODE 13.4 -558.9 -558896 0.8 SPI1 LINC02477 piR-37611-009 LINC02233 HSALNG0038215 LOC107986324 HSALNG0038202 RAPGEF2
GH04J159704 Enhancer 0.3 Ensembl 11 -552.5 -552521 0.2 RCOR1 LINC02477 piR-37611-009 LINC02233 HSALNG0038215 LOC107986324 HSALNG0038202 RAPGEF2
GH04J159592 Enhancer 0.3 Ensembl ENCODE 8.1 -663.2 -663226 3.6 LINC02477 HSALNG0038215 HSALNG0038216 LOC105379457 LOC107986324 HSALNG0038202 RAPGEF2
GH04J159548 Enhancer 0.4 ENCODE 6.1 -708.5 -708461 1.9 CEBPB EP300 STAT3 RCOR1 LINC02477 LOC107986324 lnc-RAPGEF2-5 HSALNG0038202 RAPGEF2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02477 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02477 Gene

Latest Assembly
chr4:160,257,422-160,624,421
(GRCh38/hg38)
Size:
367,000 bases
Orientation:
Plus strand

Previous Assembly
chr4:161,460,406-161,507,969
(GRCh37/hg19 by Ensembl)
Size:
47,564 bases
Orientation:
Plus strand

Genomic View for LINC02477 Gene

Genes around LINC02477 on UCSC Golden Path with GeneCards custom track
LINC02477 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02477 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02477 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02477 Gene

Proteins for LINC02477 Gene

Post-translational modifications for LINC02477 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02477 Gene

Domains & Families for LINC02477 Gene

Gene Families for LINC02477 Gene

genes like me logo Genes that share domains with LINC02477: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02477 Gene

Function for LINC02477 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02477 Gene

Localization for LINC02477 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02477 Gene

Pathways & Interactions for LINC02477 Gene

PathCards logo

SuperPathways for LINC02477 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02477 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02477 Gene

Drugs & Compounds for LINC02477 Gene

No Compound Related Data Available

Transcripts for LINC02477 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02477 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001B8B7F_9606 lncRNA 1422 4

Ensembl: ENST00000512652 (view in UCSC) ,

LncBook: HSALNT0080194,

LNCipedia: LINC02477:3,

NONCODE: NONHSAT099032.2,

URS00009C06A0_9606 lncRNA 1417 2

LncBook: HSALNT0080195,

NONCODE: NONHSAT199335.1,

URS0001BE3F50_9606 lncRNA 16254 1

LncBook: HSALNT0080188,

URS0001BE6A29_9606 lncRNA 10004 1

LncBook: HSALNT0080191,

URS0001BCC42F_9606 lncRNA 7997 1

LncBook: HSALNT0080187,

LINC02477 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02477 Gene

No ASD Table

Relevant External Links for LINC02477 Gene

GeneLoc Exon Structure for
LINC02477

No data available for mRNA/cDNA for LINC02477 Gene

Expression for LINC02477 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02477 Gene

Orthologs for LINC02477 Gene

Evolution for LINC02477 Gene

ENSEMBL:
Gene Tree for LINC02477 (if available)
TreeFam:
Gene Tree for LINC02477 (if available)

No data available for Orthologs for LINC02477 Gene

Paralogs for LINC02477 Gene

No data available for Paralogs for LINC02477 Gene

Variants for LINC02477 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02477 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02477 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02477

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02477 Gene

Disorders for LINC02477 Gene

No disorders were found for LINC02477 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02477 Gene

Publications for LINC02477 Gene

No publications were found for LINC02477 Gene.

No data available for Mastermind for LINC02477 Gene

Products for LINC02477 Gene

Sources for LINC02477 Gene