Aliases for LINC02474 Gene

Data sources for LINC02474 Gene:

Subcategory (RNA class) for LINC02474 Gene

lncRNA

Aliases for LINC02474 Gene

External Ids for LINC02474 Gene

Summaries for LINC02474 Gene

GeneCards Summary for LINC02474 Gene

LINC02474 (Long Intergenic Non-Protein Coding RNA 2474) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02474 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02474 Gene

Genomics for LINC02474 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02474 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02474 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02474 Gene

Latest Assembly
chr1:221,966,340-221,984,964
(GRCh38/hg38)
Size:
18,625 bases
Orientation:
Plus strand

Previous Assembly
chr1:222,139,752-222,158,306
(GRCh37/hg19 by Entrez Gene)
Size:
18,555 bases
Orientation:
Plus strand

chr1:222,139,683-222,158,306
(GRCh37/hg19 by Ensembl)
Size:
18,624 bases
Orientation:
Plus strand

Genomic View for LINC02474 Gene

Genes around LINC02474 on UCSC Golden Path with GeneCards custom track
LINC02474 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC02474 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02474 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02474 Gene

Proteins for LINC02474 Gene

Post-translational modifications for LINC02474 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02474 Gene

Domains & Families for LINC02474 Gene

Gene Families for LINC02474 Gene

genes like me logo Genes that share domains with LINC02474: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02474 Gene

Function for LINC02474 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02474 Gene

Localization for LINC02474 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC02474 gene
Compartment Confidence
plasma membrane 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02474 Gene

Pathways & Interactions for LINC02474 Gene

PathCards logo

SuperPathways for LINC02474 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02474 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02474 Gene

Drugs & Compounds for LINC02474 Gene

No Compound Related Data Available

Transcripts for LINC02474 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02474 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000036D982_9606 lncRNA 1148 4

Ensembl: ENST00000441160 (view in UCSC) ,

LncBook: HSALNT0022477,

LNCipedia: LINC02474:5,

NONCODE: NONHSAT009651.2,

URS0000428992_9606 lncRNA 458 4

Ensembl: ENST00000421147 (view in UCSC) ,

LncBook: HSALNT0022475,

LNCipedia: LINC02474:4,

NONCODE: NONHSAT009650.2,

URS0000BC4419_9606 lncRNA 441 1

RefSeq: NR_149071,

URS0001BDF11A_9606 lncRNA 1148 1

LncBook: HSALNT0022477,

URS0001BDB785_9606 lncRNA 455 1

LncBook: HSALNT0022475,

LINC02474 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02474 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02474 Gene

No ASD Table

Relevant External Links for LINC02474 Gene

GeneLoc Exon Structure for
LINC02474

Expression for LINC02474 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02474 Gene

Orthologs for LINC02474 Gene

Evolution for LINC02474 Gene

ENSEMBL:
Gene Tree for LINC02474 (if available)
TreeFam:
Gene Tree for LINC02474 (if available)

No data available for Orthologs for LINC02474 Gene

Paralogs for LINC02474 Gene

No data available for Paralogs for LINC02474 Gene

Variants for LINC02474 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC02474 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC02474 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02474

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02474 Gene

Disorders for LINC02474 Gene

Additional Disease Information for LINC02474

No disorders were found for LINC02474 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02474 Gene

Publications for LINC02474 Gene

  1. Identification of differential expression lncRNAs in gastric cancer using transcriptome sequencing and bioinformatics analyses. (PMID: 29693709) Wang Y … Zhang J (Molecular medicine reports 2018) 2 3

Products for LINC02474 Gene

Sources for LINC02474 Gene