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Aliases for LINC02470 Gene

Subcategory (RNA class) for LINC02470 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02470 Gene

  • Long Intergenic Non-Protein Coding RNA 2470 2 3 5

External Ids for LINC02470 Gene

Previous GeneCards Identifiers for LINC02470 Gene

  • GC12M012538
  • GC12M011576
  • GC12M011768
  • GC12M011953
  • GC12M012139
  • GC12M012315

Summaries for LINC02470 Gene

GeneCards Summary for LINC02470 Gene

LINC02470 (Long Intergenic Non-Protein Coding RNA 2470) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02470 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02470 Gene

Genomics for LINC02470 Gene

GeneHancer (GH) Regulatory Elements for LINC02470 Gene

Promoters and enhancers for LINC02470 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J009943 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 633.1 +0.8 794 2.6 ZSCAN21 ZNF600 PRDM10 POLR2A ZNF629 PATZ1 SP2 ZBTB44 ZBTB17 ZNF366 LINC02470 CLEC12A CLEC7A CLEC1B CLEC2A
GH12J009942 Enhancer 0.5 FANTOM5 dbSUPER 600.7 -1.1 -1145 0.3 GABPA LINC02470 OLR1 CLEC12A CLEC7A GABARAPL1 CD69
GH12J009864 Promoter/Enhancer 2 EPDnew Ensembl ENCODE dbSUPER 18 +74.6 74635 8.5 MAFK SP1 CREM MLLT1 PRDM10 ZNF316 CEBPB JUN JUND MAX ENSG00000255882 CLEC2B LINC02470 CLEC2A CLEC12A ENSG00000214776
GH12J009999 Promoter 0.7 EPDnew 24.3 -55.6 -55646 0.1 NFE2 MAFG CLEC1B LINC02470 CLEC12A CLEC12A-AS1 CLEC12B
GH12J009910 Enhancer 0.6 ENCODE 18 +32.4 32378 0.3 SP1 ZNF143 POLR2A CBX3 ZNF561 SCRT2 TRIM28 CBX5 LINC02470 GC12P009887 CLEC2A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02470 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02470 Gene

Genomic Locations for LINC02470 Gene
chr12:9,936,579-9,943,495
(GRCh38/hg38)
Size:
6,917 bases
Orientation:
Minus strand
chr12:10,089,178-10,096,094
(GRCh37/hg19)
Size:
6,917 bases
Orientation:
Minus strand

Genomic View for LINC02470 Gene

Genes around LINC02470 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02470 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02470 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02470 Gene

Proteins for LINC02470 Gene

Post-translational modifications for LINC02470 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02470 Gene

Domains & Families for LINC02470 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02470 Gene

Function for LINC02470 Gene

Phenotypes From GWAS Catalog for LINC02470 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02470 Gene

Localization for LINC02470 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02470 Gene

Pathways & Interactions for LINC02470 Gene

PathCards logo

SuperPathways for LINC02470 Gene

No Data Available

Interacting Proteins for LINC02470 Gene

Gene Ontology (GO) - Biological Process for LINC02470 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02470 Gene

Drugs & Compounds for LINC02470 Gene

No Compound Related Data Available

Transcripts for LINC02470 Gene

mRNA/cDNA for LINC02470 Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02470 Gene

No ASD Table

Relevant External Links for LINC02470 Gene

GeneLoc Exon Structure for
LINC02470
ECgene alternative splicing isoforms for
LINC02470

Expression for LINC02470 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02470 Gene

Orthologs for LINC02470 Gene

Evolution for LINC02470 Gene

ENSEMBL:
Gene Tree for LINC02470 (if available)
TreeFam:
Gene Tree for LINC02470 (if available)

No data available for Orthologs for LINC02470 Gene

Paralogs for LINC02470 Gene

No data available for Paralogs for LINC02470 Gene

Variants for LINC02470 Gene

Sequence variations from dbSNP and Humsavar for LINC02470 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000221986 -- 9,945,280(-) C/G/T upstream_transcript_variant
rs1000334489 -- 9,939,682(-) C/A intron_variant
rs1000349973 -- 9,943,262(-) G/T non_coding_transcript_variant
rs1000680355 -- 9,945,426(-) C/A upstream_transcript_variant
rs1000731819 -- 9,938,919(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC02470 Gene

Variant ID Type Subtype PubMed ID
esv3628519 CNV loss 21293372
nsv1044587 CNV loss 25217958
nsv1051530 CNV gain 25217958
nsv523050 CNV loss 19592680

Additional Variant Information for LINC02470 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02470

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC02470 Gene

Disorders for LINC02470 Gene

Additional Disease Information for LINC02470

No disorders were found for LINC02470 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02470 Gene

Publications for LINC02470 Gene

  1. An epigenomic approach to identifying differential overlapping and cis-acting lncRNAs in cisplatin-resistant cancer cells. (PMID: 29436261) Vera O … Ibanez de Caceres I (Epigenetics 2018) 2 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for LINC02470 Gene

Sources for LINC02470 Gene

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