Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LINC02469 Gene

Subcategory (RNA class) for LINC02469 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02469 Gene

  • Long Intergenic Non-Protein Coding RNA 2469 2 3 5

External Ids for LINC02469 Gene

Summaries for LINC02469 Gene

GeneCards Summary for LINC02469 Gene

LINC02469 (Long Intergenic Non-Protein Coding RNA 2469) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02469 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02469 Gene

Genomics for LINC02469 Gene

GeneHancer (GH) Regulatory Elements for LINC02469 Gene

Promoters and enhancers for LINC02469 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J079662 Enhancer 0.3 dbSUPER 605.1 +0.5 532 2.9 USF1 LINC02469 PCAT4 LINC00989 GC04P079715
GH04J079678 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 +15.0 14992 0.7 CC2D1A CBFA2T2 TRIM24 EGR1 ZNF639 SMARCA4 MTA1 GMEB1 DPF2 IKZF1 LINC02469 GC04P079715
GH04J079649 Enhancer 0.8 ENCODE 0.4 -12.2 -12196 3.2 SP7 ZNF600 PRDM10 ZEB2 ZNF639 ZNF629 CEBPB ARNT OSR2 TEAD1 PCAT4 LINC00989 ANTXR2 LINC02469 GC04P079613
GH04J079684 Enhancer 0.6 Ensembl dbSUPER 0.3 +21.6 21583 1 ZNF316 MAFK EMSY PCAT4 LINC02469 GC04P079715
GH04J079673 Enhancer 0.4 Ensembl dbSUPER 0.4 +10.4 10383 1.4 LINC00989 LINC02469 GC04P079715
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02469 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02469 Gene

Genomic Locations for LINC02469 Gene
chr4:79,663,718-79,696,837
(GRCh38/hg38)
Size:
33,120 bases
Orientation:
Plus strand
chr4:80,584,915-80,617,991
(GRCh37/hg19)
Size:
33,077 bases
Orientation:
Plus strand

Genomic View for LINC02469 Gene

Genes around LINC02469 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02469 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02469 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02469 Gene

Proteins for LINC02469 Gene

Post-translational modifications for LINC02469 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02469 Gene

Domains & Families for LINC02469 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02469 Gene

Function for LINC02469 Gene

Phenotypes From GWAS Catalog for LINC02469 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02469 Gene

Localization for LINC02469 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02469 Gene

Pathways & Interactions for LINC02469 Gene

PathCards logo

SuperPathways for LINC02469 Gene

No Data Available

Interacting Proteins for LINC02469 Gene

Gene Ontology (GO) - Biological Process for LINC02469 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02469 Gene

Drugs & Compounds for LINC02469 Gene

No Compound Related Data Available

Transcripts for LINC02469 Gene

mRNA/cDNA for LINC02469 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02469 Gene

No ASD Table

Relevant External Links for LINC02469 Gene

GeneLoc Exon Structure for
LINC02469
ECgene alternative splicing isoforms for
LINC02469

Expression for LINC02469 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02469 Gene

Orthologs for LINC02469 Gene

Evolution for LINC02469 Gene

ENSEMBL:
Gene Tree for LINC02469 (if available)
TreeFam:
Gene Tree for LINC02469 (if available)

No data available for Orthologs for LINC02469 Gene

Paralogs for LINC02469 Gene

No data available for Paralogs for LINC02469 Gene

Variants for LINC02469 Gene

Sequence variations from dbSNP and Humsavar for LINC02469 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000026646 -- 79,685,095(+) C/T intron_variant
rs1000040428 -- 79,664,010(+) G/A/T intron_variant
rs10002178 -- 79,688,326(+) A/G intron_variant, non_coding_transcript_variant
rs1000279085 -- 79,668,033(+) C/A non_coding_transcript_variant
rs10003351 -- 79,672,600(+) T/A/C intron_variant

Additional Variant Information for LINC02469 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02469

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02469 Gene

Disorders for LINC02469 Gene

No disorders were found for LINC02469 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02469 Gene

Publications for LINC02469 Gene

No publications were found for LINC02469 Gene.

No data available for External Links for LINC02469 Gene

Products for LINC02469 Gene

Sources for LINC02469 Gene

Content
Loading form....