Aliases for LINC02469 Gene

Subcategory (RNA class) for LINC02469 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC02469 Gene

  • Long Intergenic Non-Protein Coding RNA 2469 2 3 5
  • LINC02469 2 5 165
  • NONHSAG038299.2 91
  • HSALNG0035447 164

External Ids for LINC02469 Gene

Summaries for LINC02469 Gene

GeneCards Summary for LINC02469 Gene

LINC02469 (Long Intergenic Non-Protein Coding RNA 2469) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02469 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02469 Gene

Genomics for LINC02469 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02469 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J079662 Enhancer 0.3 dbSUPER 605.1 +0.5 545 2.9 ESR1 USF1 LINC02469 PCAT4 LINC00989 piR-53338-102 GK2 ANTXR2
GH04J079678 Enhancer 1 ENCODE dbSUPER 0.4 +15.0 15017 0.2 LEF1 IKZF1 ZNF692 JUND MTA2 PKNOX1 ZNF24 MTA1 REST DPF2 LINC02469 piR-53338-102 GK2 ANTXR2
GH04J079649 Enhancer 0.9 Ensembl ENCODE 0.4 -11.5 -11544 4.5 PRDM10 ZNF629 FOXA1 ZNF600 ARNT ZNF639 ESR1 CEBPB OSR2 TEAD1 PCAT4 LINC00989 ANTXR2 LINC02469 HSALNG0035441 GK2
GH04J079632 Enhancer 0.8 Ensembl 0.3 -31.3 -31305 0.4 LEF1 JUND MTA2 PKNOX1 DPF2 HDAC1 SOX6 TCF12 EP300 MGA HSALNG0035441 LINC02469 GK2 ANTXR2
GH04J079673 Enhancer 0.4 Ensembl dbSUPER 0.4 +9.9 9896 0.8 SPI1 LINC00989 LINC02469 piR-53338-102 GK2 ANTXR2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02469 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02469 Gene

Genomic Locations for LINC02469 Gene
chr4:79,663,705-79,696,837
(GRCh38/hg38)
Size:
33,133 bases
Orientation:
Plus strand
chr4:80,584,915-80,617,991
(GRCh37/hg19)
Size:
33,077 bases
Orientation:
Plus strand

Genomic View for LINC02469 Gene

Genes around LINC02469 on UCSC Golden Path with GeneCards custom track
LINC02469 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02469 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02469 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02469 Gene

Proteins for LINC02469 Gene

Post-translational modifications for LINC02469 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02469 Gene

Domains & Families for LINC02469 Gene

Gene Families for LINC02469 Gene

genes like me logo Genes that share domains with LINC02469: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02469 Gene

Function for LINC02469 Gene

Phenotypes From GWAS Catalog for LINC02469 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02469 Gene

Localization for LINC02469 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02469 Gene

Pathways & Interactions for LINC02469 Gene

PathCards logo

SuperPathways for LINC02469 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02469 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02469 Gene

Drugs & Compounds for LINC02469 Gene

No Compound Related Data Available

Transcripts for LINC02469 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02469 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005911AD_9606 lncRNA 741 4

HGNC: 53408,

Ensembl: ENST00000506460 (view in UCSC) ,

LNCipedia: LINC02469:5,

NONCODE: NONHSAT097120.2,

URS00008B2179_9606 lncRNA 1068 3

LncBook: HSALNT0074199,

LNCipedia: LINC02469:4,

NONCODE: NONHSAT097119.2,

LINC02469 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02469 Gene

No ASD Table

Relevant External Links for LINC02469 Gene

GeneLoc Exon Structure for
LINC02469

No data available for mRNA/cDNA for LINC02469 Gene

Expression for LINC02469 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02469 Gene

Orthologs for LINC02469 Gene

Evolution for LINC02469 Gene

ENSEMBL:
Gene Tree for LINC02469 (if available)
TreeFam:
Gene Tree for LINC02469 (if available)

No data available for Orthologs for LINC02469 Gene

Paralogs for LINC02469 Gene

No data available for Paralogs for LINC02469 Gene

Variants for LINC02469 Gene

Additional dbSNP identifiers (rs#s) for LINC02469 Gene

Additional Variant Information for LINC02469 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02469

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02469 Gene

Disorders for LINC02469 Gene

Additional Disease Information for LINC02469

No disorders were found for LINC02469 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02469 Gene

Publications for LINC02469 Gene

No publications were found for LINC02469 Gene.

No data available for Mastermind for LINC02469 Gene

Products for LINC02469 Gene

Sources for LINC02469 Gene