Aliases for LINC02459 Gene

Subcategory (RNA class) for LINC02459 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LINC02459 Gene

  • Long Intergenic Non-Protein Coding RNA 2459 2 3 5
  • LINC02459 2 5 165
  • NONHSAG012379.2 91

External Ids for LINC02459 Gene

Summaries for LINC02459 Gene

GeneCards Summary for LINC02459 Gene

LINC02459 (Long Intergenic Non-Protein Coding RNA 2459) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02459 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02459 Gene

Genomics for LINC02459 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC02459 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J114238 Enhancer 0.6 Ensembl ENCODE 0.7 +2.4 2399 2 PRDM10 JUND FOSL1 LINC02459 lnc-SDSL-11 TBX5 RBM19
GH12J114273 Enhancer 0.7 Ensembl ENCODE 0.3 -30.8 -30815 0.8 EZH2 ATF7 SCRT2 RFX1 USF1 CREB1 ATF2 JUN ZBTB21 POU5F1 LINC02459 RF00017-1286 TBX5 RBM19
GH12J114274 Enhancer 0.6 Ensembl ENCODE 0.3 -33.8 -33805 3.2 MAFK NANOG SP1 POU5F1 LINC02459 RF00017-1286 TBX5 RBM19
GH12J114222 Enhancer 0.4 VISTA Ensembl 0.4 +19.1 19104 0.6 ZBTB17 lnc-SDSL-11 LINC02459 TBX5 RBM19
GH12J114272 Enhancer 0.6 ENCODE 0.3 -30.3 -30305 0.2 CREB1 ATF7 EZH2 SCRT2 RFX1 USF1 ATF2 JUN JUND ZBTB21 LINC02459 RF00017-1286 TBX5 RBM19
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02459 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02459 Gene

Genomic Locations for LINC02459 Gene
chr12:114,238,402-114,241,986
(GRCh38/hg38)
Size:
3,585 bases
Orientation:
Minus strand
chr12:114,676,775-114,679,575
(GRCh37/hg19)
Size:
2,801 bases
Orientation:
Minus strand

Genomic View for LINC02459 Gene

Genes around LINC02459 on UCSC Golden Path with GeneCards custom track
LINC02459 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02459 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02459 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02459 Gene

Proteins for LINC02459 Gene

Post-translational modifications for LINC02459 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02459 Gene

Domains & Families for LINC02459 Gene

Gene Families for LINC02459 Gene

genes like me logo Genes that share domains with LINC02459: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02459 Gene

Function for LINC02459 Gene

Phenotypes From GWAS Catalog for LINC02459 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02459 Gene

Localization for LINC02459 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02459 Gene

Pathways & Interactions for LINC02459 Gene

PathCards logo

SuperPathways for LINC02459 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02459 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02459 Gene

Drugs & Compounds for LINC02459 Gene

No Compound Related Data Available

Transcripts for LINC02459 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02459 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003BC8C3_9606 lncRNA 474 2

Ensembl: ENST00000551761 (view in UCSC) ,

LNCipedia: LINC02459:5,

URS0000BC43C0_9606 lncRNA 473 2

HGNC: 53395,

RefSeq: NR_146536,

URS00008BD284_9606 lncRNA 1159 2

LNCipedia: LINC02459:4,

NONCODE: NONHSAT030876.2,

URS00009AF52B_9606 lncRNA 1257 1

NONCODE: NONHSAT164021.1,

LINC02459 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02459 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02459 Gene

No ASD Table

Relevant External Links for LINC02459 Gene

GeneLoc Exon Structure for
LINC02459

Expression for LINC02459 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02459

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02459 Gene

Orthologs for LINC02459 Gene

Evolution for LINC02459 Gene

ENSEMBL:
Gene Tree for LINC02459 (if available)
TreeFam:
Gene Tree for LINC02459 (if available)

No data available for Orthologs for LINC02459 Gene

Paralogs for LINC02459 Gene

No data available for Paralogs for LINC02459 Gene

Variants for LINC02459 Gene

Additional dbSNP identifiers (rs#s) for LINC02459 Gene

Additional Variant Information for LINC02459 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02459

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02459 Gene

Disorders for LINC02459 Gene

Additional Disease Information for LINC02459

No disorders were found for LINC02459 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02459 Gene

Publications for LINC02459 Gene

No publications were found for LINC02459 Gene.

No data available for Mastermind for LINC02459 Gene

Products for LINC02459 Gene

Sources for LINC02459 Gene