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Aliases for LINC02458 Gene
Subcategory (RNA class) for LINC02458 Gene
lncRNA
Aliases for LINC02458 Gene
External Ids for LINC02458 Gene
- HGNC: 53394
- NCBI Entrez Gene: 728084
- Ensembl: ENSG00000246363
Summaries for LINC02458 Gene
GeneCards Summary for LINC02458 Gene
LINC02458 (Long Intergenic Non-Protein Coding RNA 2458) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC02458 Gene
- HGNC (53394)
- NCBI Entrez Gene (728084)
- Ensembl (ENSG00000246363)
- Open Targets Platform(ENSG00000246363)
- Search for LINC02458 at DataMed
- Search for LINC02458 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02458 Gene
Genomics for LINC02458 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC02458 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH12J089019 | Promoter/Enhancer | 1.6 | EPDnew Ensembl ENCODE dbSUPER | 250.1 | +290.4 | 290390 | 0.9 | DEK CTCF THAP11 ZNF395 REST FOXA2 TRIM22 SMC3 RAD21 CTBP1 | LINC02458 GALNT4 POC1B DUSP6 LOC100287355 piR-48965-032 KITLG | |
| GH12J089318 | Enhancer | 0.5 | Ensembl CraniofacialAtlas | 10.6 | -9.3 | -9338 | 1.8 | TRIM28 SPI1 | MRPS6P4 lnc-TMTC3-11 RNU7-120P DUSP6 LINC02458 KITLG | |
| GH12J089333 | Enhancer | 1.1 | FANTOM5 ENCODE dbSUPER | 4.7 | -23.8 | -23845 | 0.9 | IKZF1 IRF2 BHLHE40 ZNF395 GTF2E2 VEZF1 GABPA RXRA SPI1 TFDP1 | DUSP6 RNU7-120P ATP2B1 LINC02458 AB372630-001 HSALNG0092937 HSALNG0092938 KITLG | |
| GH12J089322 | Enhancer | 0.2 | Ensembl | 11.5 | -12.5 | -12538 | 0.6 | RNU7-120P LINC02458 HSALNG0092937 lnc-TMTC3-11 DUSP6 KITLG | ||
| GH12J089314 | Enhancer | 0.3 | Ensembl | 4.6 | -4.4 | -4438 | 0.4 | GABPA NR4A1 | LINC02458 MRPS6P4 DUSP6 KITLG |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC02458 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC02458 Gene
Latest Assembly
- chr12:89,008,131-89,309,963
- (GRCh38/hg38)
- Size:
- 301,833 bases
- Orientation:
- Minus strand
Previous Assembly
- chr12:89,404,903-89,413,469
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 8,567 bases
- Orientation:
- Minus strand
- chr12:89,404,458-89,413,456
- (GRCh37/hg19 by Ensembl)
- Size:
- 8,999 bases
- Orientation:
- Minus strand
Genomic View for LINC02458 Gene
Genes around LINC02458 on UCSC Golden Path with GeneCards custom track
LINC02458 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 12q21.33 by HGNC
- 12q21.33 by Entrez Gene
- 12q21.33 by Ensembl
LINC02458 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC02458 Gene
Proteins for LINC02458 Gene
Post-translational modifications for LINC02458 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LINC02458 Gene
Domains & Families for LINC02458 Gene
Gene Families for LINC02458 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02458 Gene
Function for LINC02458 Gene
Phenotypes From GWAS Catalog for LINC02458 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02458 Gene
Localization for LINC02458 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02458 Gene
Transcripts for LINC02458 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02458 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000141ED9_9606 | lncRNA | 2941 | 3 |
Ensembl: ENST00000500381 (view in UCSC) , LNCipedia: LINC02458:15, NONCODE: NONHSAT029800.2, |
| URS0000759E53_9606 | lncRNA | 2512 | 2 |
RefSeq: NR_038385, LNCipedia: LINC02458:12, |
| URS0000E6C482_9606 | lncRNA | 4177 | 1 |
Ensembl: ENST00000549278 (view in UCSC) , |
| URS0000397210_9606 | lncRNA | 603 | 3 |
LncBook: HSALNT0192609, LNCipedia: LINC02458:9, NONCODE: NONHSAT029802.2, |
| URS00008B4B9D_9606 | lncRNA | 340 | 3 |
LncBook: HSALNT0192616, LNCipedia: LINC02458:10, NONCODE: NONHSAT029803.2, |
LINC02458 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC02458 Gene
- 1 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LINC02458 Gene
- GeneLoc Exon Structure for
- LINC02458
Expression for LINC02458 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02458
No Expression Related Data Available
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02458 Gene
Orthologs for LINC02458 Gene
No data available for Orthologs for LINC02458 Gene
Paralogs for LINC02458 Gene
No data available for Paralogs for LINC02458 Gene
Variants for LINC02458 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
Additional Variant Information for LINC02458 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC02458
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02458 Gene
Disorders for LINC02458 Gene
Additional Disease Information for LINC02458
- Atlas
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
- Open Targets Platform
- Open Targets Platform
No disorders were found for LINC02458 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02458 Gene
Publications for LINC02458 Gene
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
Products for LINC02458 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC02458
- Origene Custom Protein Services for LINC02458
- Browse OriGene Inhibitory RNA Products For LINC02458
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC02458
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC02458
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC02458
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC02458
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC02458
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC02458
Sources for LINC02458 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB