LINC02458 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 2458

GC12M089011
GIFtS:
10
See more...

Aliases for LINC02458 Gene

Subcategory (RNA class) for LINC02458 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for LINC02458 Gene

  • Long Intergenic Non-Protein Coding RNA 2458 2 3 5
  • LINC02458 2 5 165
  • NONHSAG011861.2 91
  • NONHSAG011859.2 91
  • HSALNG0092928 164

External Ids for LINC02458 Gene

Summaries for LINC02458 Gene

GeneCards Summary for LINC02458 Gene

LINC02458 (Long Intergenic Non-Protein Coding RNA 2458) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02458 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02458 Gene

Genomics for LINC02458 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC02458 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12J089019 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE dbSUPER 600.1 +290.0 289993 0.9 CTCF TEAD4 FOXA1 REST RAD21 TRIM22 GTF2F1 YY1 ZNF561 SCRT2 LINC02458 GALNT4 POC1B DUSP6 LOC100287355 piR-48965-032 KITLG
GH12J089307 Enhancer 0.7 Ensembl 619.4 +1.9 1865 5.4 ZNF512 FOXA1 PRDM1 SP1 SCRT2 CEBPB ZNF10 GABPA SCRT1 GATA3 LINC02458 RNU7-120P DUSP6 RF00066-050 KITLG
GH12J089318 Enhancer 0.5 Ensembl CraniofacialAtlas 10.6 -9.7 -9735 1.8 TRIM28 SPI1 MRPS6P4 lnc-TMTC3-11 RNU7-120P DUSP6 LINC02458 KITLG
GH12J089333 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 4.7 -24.2 -24242 0.9 ZNF512 IKZF1 ZNF24 NR2C1 SP1 GTF2E2 HMBOX1 NR2C2 ZBTB11 GABPA DUSP6 RNU7-120P ATP2B1 LINC02458 AB372630-001 piR-51162 KITLG
GH12J089322 Enhancer 0.3 Ensembl 11.5 -12.9 -12935 0.6 GATA3 RNU7-120P LINC02458 AB372630-001 lnc-TMTC3-11 DUSP6 KITLG
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02458 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02458 Gene

Genomic Locations for LINC02458 Gene
chr12:89,008,132-89,309,566
(GRCh38/hg38)
Size:
301,435 bases
Orientation:
Minus strand
chr12:89,404,458-89,413,469
(GRCh37/hg19)
Size:
9,012 bases
Orientation:
Minus strand

Genomic View for LINC02458 Gene

Genes around LINC02458 on UCSC Golden Path with GeneCards custom track
LINC02458 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02458 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02458 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC02458 Gene

Proteins for LINC02458 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC02458 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02458 Gene

Domains & Families for LINC02458 Gene

Gene Families for LINC02458 Gene

HGNC:
genes like me logo Genes that share domains with LINC02458: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02458 Gene

Function for LINC02458 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC02458 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02458 Gene

Localization for LINC02458 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02458 Gene

Pathways & Interactions for LINC02458 Gene

PathCards logo

SuperPathways for LINC02458 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02458 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02458 Gene

Drugs & Compounds for LINC02458 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC02458 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02458 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000141ED9_9606 lncRNA 2941 3

Ensembl: ENST00000500381 (view in UCSC) ,

LNCipedia: LINC02458:15,

NONCODE: NONHSAT029800.2,

URS0000759E53_9606 lncRNA 2509 3

HGNC: 53394,

RefSeq: NR_038385,

LNCipedia: LINC02458:12,

URS0000E6C482_9606 lncRNA 4177 1

Ensembl: ENST00000549278 (view in UCSC) ,

URS0000397210_9606 lncRNA 599 3

LncBook: HSALNT0192609,

LNCipedia: LINC02458:9,

NONCODE: NONHSAT029802.2,

URS00008B4B9D_9606 lncRNA 338 3

LncBook: HSALNT0192616,

LNCipedia: LINC02458:10,

NONCODE: NONHSAT029803.2,

LINC02458 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC02458 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02458 Gene

No ASD Table

Relevant External Links for LINC02458 Gene

GeneLoc Exon Structure for
LINC02458

Expression for LINC02458 Gene

Products:

  1. Primer

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02458

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02458 Gene

Orthologs for LINC02458 Gene

Evolution for LINC02458 Gene

ENSEMBL:
Gene Tree for LINC02458 (if available)
TreeFam:
Gene Tree for LINC02458 (if available)

No data available for Orthologs for LINC02458 Gene

Paralogs for LINC02458 Gene

No data available for Paralogs for LINC02458 Gene

Variants for LINC02458 Gene

Additional dbSNP identifiers (rs#s) for LINC02458 Gene

Additional Variant Information for LINC02458 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02458

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02458 Gene

Disorders for LINC02458 Gene

Additional Disease Information for LINC02458

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform

No disorders were found for LINC02458 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02458 Gene

Publications for LINC02458 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

ExternalLinks

View latest publications for LINC02458 gene in Mastermind

Products for LINC02458 Gene

Sources for LINC02458 Gene