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Aliases for LINC02455 Gene

Subcategory (RNA class) for LINC02455 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC02455 Gene

  • Long Intergenic Non-Protein Coding RNA 2455 2 3 5

External Ids for LINC02455 Gene

Summaries for LINC02455 Gene

GeneCards Summary for LINC02455 Gene

LINC02455 (Long Intergenic Non-Protein Coding RNA 2455) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC02455 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC02455 Gene

Genomics for LINC02455 Gene

GeneHancer (GH) Regulatory Elements for LINC02455 Gene

Promoters and enhancers for LINC02455 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J000716 Promoter/Enhancer 1.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 600.7 0.0 -17 2 CBFA2T2 ZNF121 TRIM24 PRDM1 SMARCA4 DPF2 ATF1 PKNOX1 LEF1 EP300 NINJ2 LINC02455 WNK1 RNU4ATAC16P B4GALNT3
GH12J000722 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -10.4 -10416 9.6 SP1 CC2D1A ZNF121 ZNF687 NCOA3 RELA PRDM1 MLLT1 IKZF1 ZNF600 WNK1 NINJ2 IQSEC3 RNU4ATAC16P ENSG00000177406 LINC02455
GH12J000717 Enhancer 0.8 ENCODE dbSUPER 0.7 -2.5 -2495 2.5 PRDM1 IKZF1 ZNF331 POLR2A TRIM22 ZSCAN5C ELF1 NBN ZFHX2 ZNF335 WNK1 ENSG00000261799 NINJ2 RAD52 RNU4ATAC16P ENSG00000177406 LINC02455
GH12J000685 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +31.1 31056 2.9 ZNF652 ZNF687 CREM MLLT1 IKZF1 RFX1 PKNOX1 HDAC1 IKZF2 ZNF341 CCDC77 KDM5A GC12M000680 PIR42004 GC12M000678 LINC02455
GH12J000712 Enhancer 0.7 ENCODE dbSUPER 0.7 +4.0 3954 0.2 MAFK PRDM1 ZNF316 SCRT2 MAFG LINC02455 LOC101929432
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02455 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02455 Gene

Genomic Locations for LINC02455 Gene
chr12:674,801-716,584
(GRCh38/hg38)
Size:
41,784 bases
Orientation:
Minus strand
chr12:783,967-793,293
(GRCh37/hg19)
Size:
9,327 bases
Orientation:
Minus strand

Genomic View for LINC02455 Gene

Genes around LINC02455 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02455 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02455 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02455 Gene

Proteins for LINC02455 Gene

Post-translational modifications for LINC02455 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02455 Gene

Domains & Families for LINC02455 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC02455 Gene

Function for LINC02455 Gene

Phenotypes From GWAS Catalog for LINC02455 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02455 Gene

Localization for LINC02455 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02455 Gene

Pathways & Interactions for LINC02455 Gene

PathCards logo

SuperPathways for LINC02455 Gene

No Data Available

Interacting Proteins for LINC02455 Gene

Gene Ontology (GO) - Biological Process for LINC02455 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC02455 Gene

Drugs & Compounds for LINC02455 Gene

No Compound Related Data Available

Transcripts for LINC02455 Gene

mRNA/cDNA for LINC02455 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02455 Gene

No ASD Table

Relevant External Links for LINC02455 Gene

GeneLoc Exon Structure for
LINC02455
ECgene alternative splicing isoforms for
LINC02455

Expression for LINC02455 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02455 Gene

Orthologs for LINC02455 Gene

Evolution for LINC02455 Gene

ENSEMBL:
Gene Tree for LINC02455 (if available)
TreeFam:
Gene Tree for LINC02455 (if available)

No data available for Orthologs for LINC02455 Gene

Paralogs for LINC02455 Gene

No data available for Paralogs for LINC02455 Gene

Variants for LINC02455 Gene

Sequence variations from dbSNP and Humsavar for LINC02455 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000159568 -- 682,185(-) T/C intron_variant
rs1000176820 -- 687,965(-) T/G intron_variant
rs1000213591 -- 694,293(-) C/T intron_variant
rs1000225664 -- 683,708(-) G/T intron_variant
rs1000246795 -- 716,190(-) G/A intron_variant

Additional Variant Information for LINC02455 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02455

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02455 Gene

Disorders for LINC02455 Gene

No disorders were found for LINC02455 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC02455 Gene

Publications for LINC02455 Gene

No publications were found for LINC02455 Gene.

No data available for External Links for LINC02455 Gene

Products for LINC02455 Gene

Sources for LINC02455 Gene

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