Aliases for LINC02454 Gene

Subcategory (RNA class) for LINC02454 Gene


Number of RNA Genes sources:

3 / 14

Aliases for LINC02454 Gene

  • Long Intergenic Non-Protein Coding RNA 2454 2 3 5
  • LINC02454 2 168
  • NONHSAG011557 92
  • HSALNG0091990 167

External Ids for LINC02454 Gene

Summaries for LINC02454 Gene

GeneCards Summary for LINC02454 Gene

LINC02454 (Long Intergenic Non-Protein Coding RNA 2454) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02454 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02454 Gene

Genomics for LINC02454 Gene

GeneHancer (GH) Regulatory Elements for LINC02454 Gene

Promoters and enhancers for LINC02454 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J065581 Enhancer 0.2 FANTOM5 500.7 -0.2 -169 0.3 LINC02454 lnc-WIF1-5 LOC100507065
GH12J065601 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 7.3 +22.0 22001 5.3 CTCF ZSCAN5C TCF12 JUND ZNF639 ZNF10 ZIC2 FOXA1 ZNF423 REST LEMD3 LINC02454 HMGA2 ENSG00000256915 LOC100507065
GH12J065629 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 7.1 +55.4 55388 16.4 ZNF217 ZSCAN5C TCF12 JUND FOS ZNF639 ZNF10 ZIC2 REST POLR2A LEMD3 LINC02454 HMGA2 lnc-LLPH-8 LOC100507065 PCNPP3 ENSG00000256915 LOC105369806
GH12J065653 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 7.2 +74.7 74694 7.4 TCF12 JUND FOS ZNF639 ZNF10 REST ZNF510 MYC CTBP1 EP300 LEMD3 LINC02454 HSALNG0091993 PCNPP3 ENSG00000256915
GH12J065668 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 6.5 +88.3 88294 7.4 CTCF JUND REST MYC CTBP1 CREB3L1 FOSL1 FOS ZNF592 POLR2H LINC02454 HSALNG0091993 lnc-HMGA2-3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02454 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02454 Gene

Genomic Locations for LINC02454 Gene
40,017 bases
Plus strand
10,129 bases
Plus strand

Genomic View for LINC02454 Gene

Genes around LINC02454 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02454 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02454 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02454 Gene

Proteins for LINC02454 Gene

Post-translational modifications for LINC02454 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02454 Gene

Domains & Families for LINC02454 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02454 Gene

Function for LINC02454 Gene

Phenotypes From GWAS Catalog for LINC02454 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02454 Gene

Localization for LINC02454 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02454 Gene

Pathways & Interactions for LINC02454 Gene

PathCards logo

SuperPathways for LINC02454 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02454 Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02454 Gene

Drugs & Compounds for LINC02454 Gene

No Compound Related Data Available

Transcripts for LINC02454 Gene

mRNA/cDNA for LINC02454 Gene

15 RNACentral transcripts :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
2 LncBook transcripts :
11 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02454 Gene

No ASD Table

Relevant External Links for LINC02454 Gene

GeneLoc Exon Structure for

Expression for LINC02454 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC02454

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02454 Gene

Orthologs for LINC02454 Gene

Evolution for LINC02454 Gene

Gene Tree for LINC02454 (if available)
Gene Tree for LINC02454 (if available)

No data available for Orthologs for LINC02454 Gene

Paralogs for LINC02454 Gene

No data available for Paralogs for LINC02454 Gene

Variants for LINC02454 Gene

Additional dbSNP identifiers (rs#s) for LINC02454 Gene

Additional Variant Information for LINC02454 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02454 Gene

Disorders for LINC02454 Gene

Additional Disease Information for LINC02454

No disorders were found for LINC02454 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02454 Gene

Publications for LINC02454 Gene

No publications were found for LINC02454 Gene.

Products for LINC02454 Gene

Sources for LINC02454 Gene