Aliases for LINC02449 Gene

Subcategory (RNA class) for LINC02449 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC02449 Gene

  • Long Intergenic Non-Protein Coding RNA 2449 2 3 5
  • LINC02449 2 168
  • HSALNG0089055 167
  • NONHSAG010403 92

External Ids for LINC02449 Gene

Summaries for LINC02449 Gene

GeneCards Summary for LINC02449 Gene

LINC02449 (Long Intergenic Non-Protein Coding RNA 2449) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02449 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02449 Gene

Genomics for LINC02449 Gene

GeneHancer (GH) Regulatory Elements for LINC02449 Gene

Promoters and enhancers for LINC02449 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J008235 Enhancer 0.8 Ensembl ENCODE 500.7 +1.5 1466 2.7 CTCF RAD21 TRIM22 SMC3 ZNF263 SAP130 SMARCA5 ZNF654 KLF17 USF2 LINC02449 piR-55279-001 FAM86FP lnc-FAM90A1-1
GH12J008241 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 0.4 +8.2 8221 3.4 ZNF300 PHF8 ZBTB10 ZBTB26 RFX1 CHD1 ZEB1 SREBF2 POLR2A ZNF491 FAM86FP ENSG00000286895 lnc-FAM90A1-1 piR-41981-001 piR-56774-001 FAM90A1 PHC1 NANOG RIMKLB ENSG00000256552
GH12J008231 Enhancer 0.9 Ensembl ENCODE 0.7 -3.2 -3179 2.2 ZBTB40 CTCF ZIC2 REST RAD21 TRIM22 ZEB1 SMC3 ZNF592 SMARCA5 piR-54151-002 FAM86FP ALG1L10P LINC02449 lnc-ZNF705A-4 lnc-FAM90A1-1
GH12J008246 Enhancer 0.7 Ensembl 0.4 +11.9 11921 0.8 ZEB1 OSR2 ZNF282 SRF ZNF335 HIC1 ZNF391 ZNF398 ZNF24 MAZ FAM86FP ENSG00000286895 piR-56774-001 piR-57133-099 LINC02449
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02449 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC02449 Gene

Genomic Locations for LINC02449 Gene
chr12:8,235,080-8,251,393
(GRCh38/hg38)
Size:
16,314 bases
Orientation:
Plus strand
chr12:8,388,011-8,395,160
(GRCh37/hg19)
Size:
7,150 bases
Orientation:
Plus strand

Genomic View for LINC02449 Gene

Genes around LINC02449 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC02449 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02449 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC02449 Gene

Proteins for LINC02449 Gene

Post-translational modifications for LINC02449 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02449 Gene

Domains & Families for LINC02449 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02449 Gene

Function for LINC02449 Gene

Phenotypes From GWAS Catalog for LINC02449 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02449 Gene

Localization for LINC02449 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02449 Gene

Pathways & Interactions for LINC02449 Gene

PathCards logo

SuperPathways for LINC02449 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC02449 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02449 Gene

Drugs & Compounds for LINC02449 Gene

No Compound Related Data Available

Transcripts for LINC02449 Gene

mRNA/cDNA for LINC02449 Gene

9 RNACentral transcripts :
2 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
6 NONCODE transcripts :
4 LncBook transcripts :
7 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02449 Gene

No ASD Table

Relevant External Links for LINC02449 Gene

GeneLoc Exon Structure for
LINC02449

Expression for LINC02449 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02449 Gene

Orthologs for LINC02449 Gene

Evolution for LINC02449 Gene

ENSEMBL:
Gene Tree for LINC02449 (if available)
TreeFam:
Gene Tree for LINC02449 (if available)

No data available for Orthologs for LINC02449 Gene

Paralogs for LINC02449 Gene

No data available for Paralogs for LINC02449 Gene

Variants for LINC02449 Gene

Additional dbSNP identifiers (rs#s) for LINC02449 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC02449 Gene

Variant ID Type Subtype PubMed ID
dgv1358n100 CNV gain 25217958
dgv1359n100 CNV gain 25217958
dgv1360n100 CNV gain 25217958
dgv2339n54 CNV gain 21841781
dgv247e214 CNV gain 21293372
esv2523633 CNV loss 19546169
esv2668107 CNV deletion 23128226
esv2759877 CNV gain+loss 17122850
esv2760766 CNV gain 21179565
esv2871568 CNV duplication 24192839
esv29886 CNV gain+loss 19812545
esv3628460 CNV loss 21293372
nsv1159957 CNV duplication 26073780
nsv1159958 CNV duplication 26073780
nsv428270 CNV gain 18775914
nsv433419 CNV gain 18776910
nsv557337 CNV loss 21841781
nsv557338 CNV gain 21841781
nsv557339 CNV loss 21841781
nsv826226 CNV gain 20364138
nsv952794 CNV deletion 24416366
nsv973015 CNV duplication 23825009

Additional Variant Information for LINC02449 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02449

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC02449 Gene

Disorders for LINC02449 Gene

Additional Disease Information for LINC02449

No disorders were found for LINC02449 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02449 Gene

Publications for LINC02449 Gene

No publications were found for LINC02449 Gene.

No data available for Mastermind for LINC02449 Gene

Products for LINC02449 Gene

Sources for LINC02449 Gene