LINC02448 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 2448

GC12M059487
GIFtS:
6
See more...

Aliases for LINC02448 Gene

Subcategory (RNA class) for LINC02448 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LINC02448 Gene

  • Long Intergenic Non-Protein Coding RNA 2448 2 3 5
  • LINC02448 2 5 165
  • HSALNG0091753 164

External Ids for LINC02448 Gene

Summaries for LINC02448 Gene

GeneCards Summary for LINC02448 Gene

LINC02448 (Long Intergenic Non-Protein Coding RNA 2448) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC02448 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC02448 Gene

Genomics for LINC02448 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC02448 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH12J059594 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 5.5 -72.6 -72584 3.9 CEBPG SP1 PRDM10 REST PRDM1 ZSCAN4 POLR2A PATZ1 IKZF2 GTF2F1 SLC16A7 LINC02448 lnc-ATP23-2
GH12J059578 Enhancer 0.4 Ensembl ENCODE 5.5 -54.8 -54752 3.5 ATF2 LINC02448 RNU4-20P RF00015-017 piR-50357-036 SLC16A7 LRIG3
GH12J059471 Enhancer 0.4 Ensembl 6.3 +51.7 51683 1 RUNX3 SPI1 POLR2A RNU4-20P LINC02448 piR-37026-127 SLC16A7 LRIG3
GH12J059474 Enhancer 0.2 Ensembl 6.2 +49.8 49783 0.4 LINC02448 piR-37026-127 SLC16A7 LRIG3
GH12J059499 Enhancer 0.4 Ensembl 0.4 +23.5 23483 2.2 SCRT2 USF1 JUNB BATF RNU6-871P RNU4-20P SLC16A7 LINC02448 piR-37026-127 LRIG3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC02448 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC02448 Gene

Genomic Locations for LINC02448 Gene
chr12:59,521,997-59,524,184
(GRCh38/hg38)
Size:
2,188 bases
Orientation:
Minus strand
chr12:59,917,059-59,917,965
(GRCh37/hg19)
Size:
907 bases
Orientation:
Minus strand

Genomic View for LINC02448 Gene

Genes around LINC02448 on UCSC Golden Path with GeneCards custom track
LINC02448 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC02448 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC02448 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC02448 Gene

Proteins for LINC02448 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC02448 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC02448 Gene

Domains & Families for LINC02448 Gene

Gene Families for LINC02448 Gene

HGNC:
genes like me logo Genes that share domains with LINC02448: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC02448 Gene

Function for LINC02448 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC02448 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC02448 Gene

Localization for LINC02448 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC02448 Gene

Pathways & Interactions for LINC02448 Gene

PathCards logo

SuperPathways for LINC02448 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC02448 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC02448 Gene

Drugs & Compounds for LINC02448 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC02448 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC02448 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007CCF40_9606 lncRNA 583 4

HGNC: 53380,

Ensembl: ENST00000548613 (view in UCSC) ,

LncBook: HSALNT0190267,

LNCipedia: LINC02448:3,

LINC02448 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC02448 Gene

No ASD Table

Relevant External Links for LINC02448 Gene

GeneLoc Exon Structure for
LINC02448

No data available for mRNA/cDNA for LINC02448 Gene

Expression for LINC02448 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC02448 Gene

Orthologs for LINC02448 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC02448 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia -- 31
  • 96 (a)
 OneToOne
Species where no ortholog for LINC02448 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for LINC02448 Gene

ENSEMBL:
Gene Tree for LINC02448 (if available)
TreeFam:
Gene Tree for LINC02448 (if available)

Paralogs for LINC02448 Gene

No data available for Paralogs for LINC02448 Gene

Variants for LINC02448 Gene

Additional dbSNP identifiers (rs#s) for LINC02448 Gene

Additional Variant Information for LINC02448 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC02448

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC02448 Gene

Disorders for LINC02448 Gene

Additional Disease Information for LINC02448

Open Targets Platform

No disorders were found for LINC02448 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC02448 Gene

Publications for LINC02448 Gene

No publications were found for LINC02448 Gene.

No data available for Mastermind for LINC02448 Gene

Products for LINC02448 Gene

Sources for LINC02448 Gene